myRT

myRT report for GCA_900458145.1_41556_B01

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Seq: UHBW01000001.1 Staphylococcus aureus strain NCTC10655 genome assembly, contig: ERS825167SCcontig000001, whole genome shotgun sequence (2856095 bp)
Overview 1 RT 1: 102512-106445 bp 2 RT 2: 283402-289257 bp 3 RT 3: 386131-389844 bp 4 RT 4: 447400-452285 bp 5 RT 5: 510714-517939 bp 6 RT 6: 686370-690720 bp 7 RT 7: 877180-881451 bp 8 RT 8: 963405-968476 bp 9 RT 9: 1356676-1361912 bp 10 RT 10: 1433091-1438442 bp 11 RT 11: 1459620-1465146 bp 12 RT 12: 1494022-1500533 bp 13 RT 13: 1676702-1681642 bp 14 RT 14: 1939313-1944393 bp 15 RT 15: 2071416-2076297 bp 16 RT 16: 2289866-2293851 bp 17 RT 17: 2409083-2414197 bp Neighborhood of RT #1 [102512, 106445] SbnI_like_N RVT-GII GIIM Neighborhood of RT #2 [283402, 289259] ABC2_membrane_3 RVT-GII GIIM COG3942 Neighborhood of RT #3 [386131, 389844] SsuE RVT-GII GIIM YeiH Neighborhood of RT #4 [447400, 452296] SA1633_like RVT-GII GIIM Stap_Strp_toxin Stap_Strp_tox_C Stap_Strp_toxin Stap_Strp_tox_C Neighborhood of RT #5 [510714, 518010] GOGAT_sm_gam RVT-GII GIIM PTS-IIBC-Tre trehalose_treC Neighborhood of RT #6 [686370, 690722] RVT-GII GIIM YdiL groES Neighborhood of RT #7 [877180, 881462] transald_staph RVT-GII GIIM YdiL YdiL Neighborhood of RT #8 [963405, 968481] PRK00180 RVT-GII GIIM UspA Ald Neighborhood of RT #9 [1356676, 1361917] CvfB RVT-GII GIIM ptsS_2 PstC Neighborhood of RT #10 [1433091, 1438442] PRK06349 PRK09034 RVT-GII GIIM Neighborhood of RT #11 [1459620, 1465178] MiaA PldB RVT-GII GIIM GlpA Neighborhood of RT #12 [1494022, 1500535] RnjA Pnp RVT-GII GIIM rpsO Neighborhood of RT #13 [1676702, 1681710] TypA DUF5325 RVT-GII GIIM SuhB Neighborhood of RT #14 [1939313, 1944404] tpiA PRK13962 RVT-GII GIIM GapA Neighborhood of RT #15 [2071416, 2076302] Aes RVT-GII GIIM YkvI Neighborhood of RT #16 [2289866, 2293871] RVT-GII GIIM ParA Neighborhood of RT #17 [2409083, 2414199] antiport_nhaC PRK06753 Octopine_DH RVT-GII GIIM Tic20 Feature: gene Location: 102512-103276 bp Feature: domain Description: SbnI_like_N Location: 102536-102764 bp Feature: domain Description: SbnI_like_N Location: 1 02536-1 02764 bp Feature: gene Location: 103634-103843 bp Feature: gene Location: 103895-105190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104120-104735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 041 20-1 04735 bp Feature: domain Description: GIIM Note: maturase Location: 104795-105029 bp Feature: domain Description: GIIM Note: maturase Location: 1 04795-1 05029 bp Feature: gene Location: 105341-105769 bp Feature: gene Location: 105819-106445 bp Feature: gene Location: 283402-284568 bp Feature: domain Description: ABC2_membrane_3 Location: 283453-284536 bp Feature: domain Description: ABC2_membrane_3 Location: 283453-284536 bp Feature: gene Location: 284866-285075 bp Feature: gene Location: 285127-286422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285352-285967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285352-285967 bp Feature: domain Description: GIIM Note: maturase Location: 286027-286261 bp Feature: domain Description: GIIM Note: maturase Location: 286027-286261 bp Feature: gene Location: 286505-288028 bp Feature: gene Location: 288357-289259 bp Feature: domain Description: COG3942 Location: 288747-289257 bp Feature: domain Description: COG3942 Location: 288747-289257 bp Feature: gene Location: 386131-386697 bp Feature: domain Description: SsuE Location: 386134-386665 bp Feature: domain Description: SsuE Location: 3861 34-386665 bp Feature: gene Location: 386993-387202 bp Feature: gene Location: 387254-388549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 387479-388094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 387479-388094 bp Feature: domain Description: GIIM Note: maturase Location: 388154-388388 bp Feature: domain Description: GIIM Note: maturase Location: 3881 54-388388 bp Feature: gene Location: 388626-389621 bp Feature: domain Description: YeiH Location: 388638-389613 bp Feature: domain Description: YeiH Location: 388638-38961 3 bp Feature: gene Location: 389686-389844 bp Feature: gene Location: 447400-447954 bp Feature: domain Description: SA1633_like Location: 447532-447952 bp Feature: domain Description: SA1 633_like Location: 447532-447952 bp Feature: gene Location: 448485-448694 bp Feature: gene Location: 448746-450041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 448971-449586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 448971 -449586 bp Feature: domain Description: GIIM Note: maturase Location: 449646-449880 bp Feature: domain Description: GIIM Note: maturase Location: 449646-449880 bp Feature: gene Location: 450607-451407 bp Feature: domain Description: Stap_Strp_toxin Location: 450769-451039 bp Feature: domain Description: Stap_Strp_toxin Location: 450769-451 039 bp Feature: domain Description: Stap_Strp_tox_C Location: 451078-451390 bp Feature: domain Description: Stap_Strp_tox_C Location: 451 078-451 390 bp Feature: gene Location: 451574-452296 bp Feature: domain Description: Stap_Strp_toxin Location: 451685-451898 bp Feature: domain Description: Stap_Strp_toxin Location: 451 685-451 898 bp Feature: domain Description: Stap_Strp_tox_C Location: 451934-452285 bp Feature: domain Description: Stap_Strp_tox_C Location: 451 934-452285 bp Feature: gene Location: 510714-512177 bp Feature: domain Description: GOGAT_sm_gam Location: 510729-512163 bp Feature: domain Description: GOGAT_sm_gam Location: 51 0729-51 21 63 bp Feature: gene Location: 512847-513056 bp Feature: gene Location: 513108-514403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 513333-513948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 3333-51 3948 bp Feature: domain Description: GIIM Note: maturase Location: 514008-514242 bp Feature: domain Description: GIIM Note: maturase Location: 51 4008-51 4242 bp Feature: gene Location: 514879-516306 bp Feature: domain Description: PTS-IIBC-Tre Location: 514897-516268 bp Feature: domain Description: PTS-IIBC-Tre Location: 51 4897-51 6268 bp Feature: gene Location: 516370-518010 bp Feature: domain Description: trehalose_treC Location: 516391-517939 bp Feature: domain Description: trehalose_treC Location: 51 6391 -51 7939 bp Feature: gene Location: 686370-687626 bp Feature: gene Location: 687887-688096 bp Feature: gene Location: 688148-689443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 688373-688988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 688373-688988 bp Feature: domain Description: GIIM Note: maturase Location: 689048-689282 bp Feature: domain Description: GIIM Note: maturase Location: 689048-689282 bp Feature: gene Location: 689520-690263 bp Feature: domain Description: YdiL Location: 689526-690189 bp Feature: domain Description: YdiL Location: 689526-6901 89 bp Feature: gene Location: 690438-690722 bp Feature: domain Description: groES Location: 690441-690720 bp Feature: domain Description: groES Location: 690441 -690720 bp Feature: gene Location: 877180-877893 bp Feature: domain Description: transald_staph Location: 877183-877891 bp Feature: domain Description: transald_staph Location: 8771 83-877891 bp Feature: gene Location: 878184-878393 bp Feature: gene Location: 878445-879740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 878670-879285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 878670-879285 bp Feature: domain Description: GIIM Note: maturase Location: 879345-879579 bp Feature: domain Description: GIIM Note: maturase Location: 879345-879579 bp Feature: gene Location: 880265-880885 bp Feature: domain Description: YdiL Location: 880328-880874 bp Feature: domain Description: YdiL Location: 880328-880874 bp Feature: gene Location: 881052-881462 bp Feature: domain Description: YdiL Location: 881061-881451 bp Feature: domain Description: YdiL Location: 881 061 -881 451 bp Feature: gene Location: 963405-964607 bp Feature: domain Description: PRK00180 Location: 963417-964590 bp Feature: domain Description: PRK001 80 Location: 96341 7-964590 bp Feature: gene Location: 964910-965119 bp Feature: gene Location: 965171-966466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 965396-966011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 965396-96601 1 bp Feature: domain Description: GIIM Note: maturase Location: 966071-966305 bp Feature: domain Description: GIIM Note: maturase Location: 966071 -966305 bp Feature: gene Location: 966722-967222 bp Feature: domain Description: UspA Location: 966731-967157 bp Feature: domain Description: UspA Location: 966731 -9671 57 bp Feature: gene Location: 967315-968481 bp Feature: domain Description: Ald Location: 967366-968476 bp Feature: domain Description: Ald Location: 967366-968476 bp Feature: gene Location: 1356676-1357578 bp Feature: domain Description: CvfB Location: 1356691-1357546 bp Feature: domain Description: CvfB Location: 1 356691 -1 357546 bp Feature: gene Location: 1357970-1358179 bp Feature: gene Location: 1358231-1359526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1358456-1359071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 358456-1 359071 bp Feature: domain Description: GIIM Note: maturase Location: 1359131-1359365 bp Feature: domain Description: GIIM Note: maturase Location: 1 3591 31 -1 359365 bp Feature: gene Location: 1359817-1360800 bp Feature: domain Description: ptsS_2 Location: 1359820-1360687 bp Feature: domain Description: ptsS_2 Location: 1 359820-1 360687 bp Feature: gene Location: 1360991-1361917 bp Feature: domain Description: PstC Location: 1361027-1361912 bp Feature: domain Description: PstC Location: 1 361 027-1 361 91 2 bp Feature: gene Location: 1433091-1434371 bp Feature: domain Description: PRK06349 Location: 1433094-1434138 bp Feature: domain Description: PRK06349 Location: 1 433094-1 4341 38 bp Feature: gene Location: 1434562-1435944 bp Feature: domain Description: PRK09034 Location: 1434565-1435909 bp Feature: domain Description: PRK09034 Location: 1 434565-1 435909 bp Feature: gene Location: 1436021-1437316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1436246-1436861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 436246-1 436861 bp Feature: domain Description: GIIM Note: maturase Location: 1436921-1437155 bp Feature: domain Description: GIIM Note: maturase Location: 1 436921 -1 4371 55 bp Feature: gene Location: 1437368-1437577 bp Feature: gene Location: 1437867-1438442 bp Feature: gene Location: 1459620-1460567 bp Feature: domain Description: MiaA Location: 1459647-1460553 bp Feature: domain Description: MiaA Location: 1 459647-1 460553 bp Feature: gene Location: 1460573-1461490 bp Feature: domain Description: PldB Location: 1460582-1461482 bp Feature: domain Description: PldB Location: 1 460582-1 461 482 bp Feature: gene Location: 1461657-1462952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1461882-1462497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 461 882-1 462497 bp Feature: domain Description: GIIM Note: maturase Location: 1462557-1462791 bp Feature: domain Description: GIIM Note: maturase Location: 1 462557-1 462791 bp Feature: gene Location: 1463004-1463213 bp Feature: gene Location: 1463505-1465178 bp Feature: domain Description: GlpA Location: 1463529-1465146 bp Feature: domain Description: GlpA Location: 1 463529-1 4651 46 bp Feature: gene Location: 1494022-1495746 bp Feature: domain Description: RnjA Location: 1494088-1495735 bp Feature: domain Description: RnjA Location: 1 494088-1 495735 bp Feature: gene Location: 1495931-1498027 bp Feature: domain Description: Pnp Location: 1495943-1498022 bp Feature: domain Description: Pnp Location: 1 495943-1 498022 bp Feature: gene Location: 1498417-1499712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1498642-1499257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 498642-1 499257 bp Feature: domain Description: GIIM Note: maturase Location: 1499317-1499551 bp Feature: domain Description: GIIM Note: maturase Location: 1 49931 7-1 499551 bp Feature: gene Location: 1499764-1499973 bp Feature: gene Location: 1500266-1500535 bp Feature: domain Description: rpsO Location: 1500269-1500533 bp Feature: domain Description: rpsO Location: 1 500269-1 500533 bp Feature: gene Location: 1676702-1678585 bp Feature: domain Description: TypA Location: 1676753-1678556 bp Feature: domain Description: TypA Location: 1 676753-1 678556 bp Feature: gene Location: 1678651-1678842 bp Feature: domain Description: DUF5325 Location: 1678663-1678840 bp Feature: domain Description: DUF5325 Location: 1 678663-1 678840 bp Feature: gene Location: 1679016-1680311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1679241-1679856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 679241 -1 679856 bp Feature: domain Description: GIIM Note: maturase Location: 1679916-1680150 bp Feature: domain Description: GIIM Note: maturase Location: 1 67991 6-1 6801 50 bp Feature: gene Location: 1680363-1680572 bp Feature: gene Location: 1680865-1681710 bp Feature: domain Description: SuhB Location: 1680913-1681642 bp Feature: domain Description: SuhB Location: 1 68091 3-1 681 642 bp Feature: gene Location: 1939313-1940173 bp Feature: domain Description: tpiA Location: 1939418-1940165 bp Feature: domain Description: tpiA Location: 1 93941 8-1 9401 65 bp Feature: gene Location: 1940196-1941386 bp Feature: domain Description: PRK13962 Location: 1940199-1941381 bp Feature: domain Description: PRK1 3962 Location: 1 9401 99-1 941 381 bp Feature: gene Location: 1941494-1942789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1941719-1942334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 941 71 9-1 942334 bp Feature: domain Description: GIIM Note: maturase Location: 1942394-1942628 bp Feature: domain Description: GIIM Note: maturase Location: 1 942394-1 942628 bp Feature: gene Location: 1942841-1943050 bp Feature: gene Location: 1943394-1944404 bp Feature: domain Description: GapA Location: 1943403-1944393 bp Feature: domain Description: GapA Location: 1 943403-1 944393 bp Feature: gene Location: 2071416-2071844 bp Feature: gene Location: 2072172-2073215 bp Feature: domain Description: Aes Location: 2072220-2073126 bp Feature: domain Description: Aes Location: 2072220-20731 26 bp Feature: gene Location: 2073343-2074638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2073568-2074183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2073568-20741 83 bp Feature: domain Description: GIIM Note: maturase Location: 2074243-2074477 bp Feature: domain Description: GIIM Note: maturase Location: 2074243-2074477 bp Feature: gene Location: 2074690-2074899 bp Feature: gene Location: 2075235-2076302 bp Feature: domain Description: YkvI Location: 2075250-2076297 bp Feature: domain Description: YkvI Location: 2075250-2076297 bp Feature: gene Location: 2289866-2290015 bp Feature: gene Location: 2290962-2292257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2291187-2291802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2291 1 87-2291 802 bp Feature: domain Description: GIIM Note: maturase Location: 2291862-2292096 bp Feature: domain Description: GIIM Note: maturase Location: 2291 862-2292096 bp Feature: gene Location: 2292309-2292518 bp Feature: gene Location: 2292807-2293871 bp Feature: domain Description: ParA Location: 2293143-2293851 bp Feature: domain Description: ParA Location: 22931 43-2293851 bp Feature: gene Location: 2409083-2410483 bp Feature: domain Description: antiport_nhaC Location: 2409095-2410460 bp Feature: domain Description: antiport_nhaC Location: 2409095-241 0460 bp Feature: gene Location: 2410578-2411660 bp Feature: domain Description: PRK06753 Location: 2410581-2410704 bp Feature: domain Description: PRK06753 Location: 241 0581 -241 0704 bp Feature: domain Description: Octopine_DH Location: 2411139-2411577 bp Feature: domain Description: Octopine_DH Location: 241 1 1 39-241 1 577 bp Feature: gene Location: 2411793-2413088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2412018-2412633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 201 8-241 2633 bp Feature: domain Description: GIIM Note: maturase Location: 2412693-2412927 bp Feature: domain Description: GIIM Note: maturase Location: 241 2693-241 2927 bp Feature: gene Location: 2413140-2413349 bp Feature: gene Location: 2413777-2414199 bp Feature: domain Description: Tic20 Location: 2413780-2414197 bp Feature: domain Description: Tic20 Location: 241 3780-241 41 97 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SbnI_like_N (cd16388), RVT-GII, GIIM (pfam08388), ABC2_membrane_3 (pfam12698), COG3942 (Surface antigen ), SsuE (COG0431), YeiH (COG2855), SA1633_like (cl24066), Stap_Strp_toxin (pfam01123), Stap_Strp_tox_C (pfam02876)
GOGAT_sm_gam (TIGR01317), PTS-IIBC-Tre (TIGR01992), trehalose_treC (TIGR02403), YdiL (COG1266), groES (PRK14533), transald_staph (TIGR02134), PRK00180 (acetate kinase A/propionate kinase 2; Reviewed), UspA (COG0589), Ald (COG0686), CvfB (COG2996)
ptsS_2 (TIGR02136), PstC (COG0573), PRK06349 (homoserine dehydrogenase; Provisional), PRK09034 (aspartate kinase; Reviewed), MiaA (COG0324), PldB (COG2267), GlpA (COG0578), RnjA (COG0595), Pnp (COG1185), rpsO (PRK05626)
TypA (COG1217), DUF5325 (pfam17259), SuhB (COG0483), tpiA (PRK00042), PRK13962 (bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional), GapA (COG0057), Aes (COG0657), YkvI (COG3949), ParA (pfam10609), antiport_nhaC (TIGR00931)
PRK06753 (hypothetical protein; Provisional), Octopine_DH (pfam02317), Tic20 (COG3296)