myRT

myRT report for GCA_900458705.1_50432_E01

Download annotations/find similar RTs

Seq: UHDT01000004.1 Staphylococcus microti strain NCTC13832 genome assembly, contig: ERS1295513SCcontig000004, whole genome shotgun sequence (46253 bp)
Overview 1 RT 1: 16186-21754 bp Neighborhood of RT #1 [16186, 21768] TIGR02919 RVT-GII GIIM COG3666 DDE_Tnp_1_6 Staph_reg_Sar Feature: gene Location: 16186-17526 bp Feature: domain Description: TIGR02919 Location: 16189-17509 bp Feature: domain Description: TIGR0291 9 Location: 1 61 89-1 7509 bp Feature: gene Location: 17897-18025 bp Feature: gene Location: 18143-19438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18368-18983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8368-1 8983 bp Feature: domain Description: GIIM Note: maturase Location: 19043-19277 bp Feature: domain Description: GIIM Note: maturase Location: 1 9043-1 9277 bp Feature: gene Location: 19536-20969 bp Feature: domain Description: COG3666 Location: 19548-19992 bp Feature: domain Description: COG3666 Location: 1 9548-1 9992 bp Feature: domain Description: DDE_Tnp_1_6 Location: 20571-20922 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 20571 -20922 bp Feature: gene Location: 21370-21768 bp Feature: domain Description: Staph_reg_Sar Location: 21439-21754 bp Feature: domain Description: Staph_reg_Sar Location: 21 439-21 754 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02919 (accessory Sec system glycosyltransferase GtfB), RVT-GII, GIIM (pfam08388), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), Staph_reg_Sar (TIGR01889)

Seq: UHDT01000001.1 Staphylococcus microti strain NCTC13832 genome assembly, contig: ERS1295513SCcontig000001, whole genome shotgun sequence (2360918 bp)
Overview 1 RT 1: 106716-110318 bp 2 RT 2: 1521072-1525479 bp Neighborhood of RT #1 [106716, 110359] Tra8 RVT-GII GIIM DDE_Tnp_1_6 COG3666 Neighborhood of RT #2 [1521072, 1525856] CrcB COG3666 DDE_Tnp_1_6 RVT-GII GIIM NERD Feature: gene Location: 106716-107051 bp Feature: domain Description: Tra8 Location: 106728-107025 bp Feature: domain Description: Tra8 Location: 10672 8-10702 5 bp Feature: gene Location: 107322-107450 bp Feature: gene Location: 107568-108920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107793-108408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107793-108408 bp Feature: domain Description: GIIM Note: maturase Location: 108471-108702 bp Feature: domain Description: GIIM Note: maturase Location: 108471-108702 bp Feature: gene Location: 109161-109814 bp Feature: domain Description: DDE_Tnp_1_6 Location: 109584-109797 bp Feature: domain Description: DDE_Tnp_1_6 Location: 109584-109797 bp Feature: gene Location: 109862-110359 bp Feature: domain Description: COG3666 Location: 109874-110318 bp Feature: domain Description: COG3666 Location: 109874-110318 bp Feature: gene Location: 1521072-1521422 bp Feature: domain Description: CrcB Location: 1521078-1521417 bp Feature: domain Description: CrcB Location: 152 1078-152 1417 bp Feature: gene Location: 1521576-1523009 bp Feature: domain Description: COG3666 Location: 1521588-1522032 bp Feature: domain Description: COG3666 Location: 152 1588-152 2 032 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1522611-1522962 bp Feature: domain Description: DDE_Tnp_1_6 Location: 152 2 611-152 2 962 bp Feature: gene Location: 1523107-1524402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1523332-1523947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152 3332 -152 3947 bp Feature: domain Description: GIIM Note: maturase Location: 1524007-1524241 bp Feature: domain Description: GIIM Note: maturase Location: 152 4007-152 42 41 bp Feature: gene Location: 1524520-1524648 bp Feature: gene Location: 1524945-1525856 bp Feature: domain Description: NERD Location: 1525290-1525479 bp Feature: domain Description: NERD Location: 152 52 90-152 5479 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), RVT-GII, GIIM (pfam08388), DDE_Tnp_1_6 (pfam13751), COG3666 (Transposase ), CrcB (COG0239), NERD (pfam08378)