myRT

myRT report for GCA_900458965.1_43188_F01

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Seq: UAVB01000001.1 Streptococcus agalactiae strain NCTC8181 genome assembly, contig: ERS1003590SCcontig000001, whole genome shotgun sequence (2282777 bp)
Overview 1 RT 1: 41528-46584 bp 2 RT 2: 221962-227990 bp 3 RT 3: 311280-318987 bp 4 RT 4: 368071-374593 bp 5 RT 5: 429821-433690 bp 6 RT 6: 520243-530370 bp 7 RT 7: 545461-553148 bp 8 RT 8: 652611-658040 bp 9 RT 9: 742553-750181 bp 10 RT 10: 955084-959614 bp 11 RT 11: 1004238-1009317 bp 12 RT 12: 1201819-1209513 bp 13 RT 13: 1610434-1618952 bp 14 RT 14: 1666631-1671017 bp 15 RT 15: 1743834-1747171 bp 16 RT 16: 2103711-2109970 bp Neighborhood of RT #1 [41528, 46610] MurE COG3442 RVT-GII GIIM lipoyltrans Neighborhood of RT #2 [221962, 228004] YraQ YcgQ RVT-GII GIIM PRK10416 Cof Neighborhood of RT #3 [311280, 319055] Peptidase_M23 Phage_lysozyme2 PRK08581 TraC-F-type RVT_N RVT-GII GIIM TraC-F-type PrgI Neighborhood of RT #4 [368071, 374595] PRK05764 PRK07246 RVT-GII GIIM PRK08643 Neighborhood of RT #5 [429821, 433698] RHOD ROK_glcA_fam RVT_N RVT-GII GIIM ROK_glcA_fam YqgQ Neighborhood of RT #6 [520243, 530370] RVT_N RVT-GII GIIM N6_Mtase COG4646 KOG0390 Neighborhood of RT #7 [545461, 553234] Peptidase_M23 Phage_lysozyme2 PRK08581 TraC-F-type RVT_N RVT-GII GIIM TraC-F-type PrgI Neighborhood of RT #8 [652611, 658078] CelB CelA RVT_N RVT-GII GIIM CelC DeoR Neighborhood of RT #9 [742553, 750282] Peptidase_M23 Phage_lysozyme2 PRK08581 TraC-F-type RVT_N RVT-GII GIIM TraC-F-type PrgI Neighborhood of RT #10 [955084, 959625] PhoE PRK08295 RVT-GII GIIM DUF2992 NTP_transf_6 Neighborhood of RT #11 [1004238, 1009349] AXE1 NagC RVT_N RVT-GII GIIM NagC NAL Neighborhood of RT #12 [1201819, 1209584] BaeS RVT-GII GIIM PLN02563 MFS_MucK Neighborhood of RT #13 [1610434, 1618978] Der HepA RVT-GII GIIM MurC Neighborhood of RT #14 [1666631, 1671244] PHA02517 InsE RVT-GII GIIM PolyPPase_VTC_like DUF4956 Neighborhood of RT #15 [1743834, 1747182] RVT-GII GIIM GlnQ Neighborhood of RT #16 [2103711, 2109975] MdlB RVT-GII GIIM PGM2 COG4684 Feature: gene Location: 41528-42871 bp Feature: domain Description: MurE Location: 41561-42866 bp Feature: domain Description: MurE Location: 41 561 -42866 bp Feature: gene Location: 42985-43656 bp Feature: domain Description: COG3442 Location: 42988-43645 bp Feature: domain Description: COG3442 Location: 42988-43645 bp Feature: gene Location: 43722-44999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43926-44541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43926-44541 bp Feature: domain Description: GIIM Note: maturase Location: 44595-44811 bp Feature: domain Description: GIIM Note: maturase Location: 44595-4481 1 bp Feature: gene Location: 45364-45573 bp Feature: gene Location: 45621-46610 bp Feature: domain Description: lipoyltrans Location: 45636-46584 bp Feature: domain Description: lipoyltrans Location: 45636-46584 bp Feature: gene Location: 221962-222864 bp Feature: domain Description: YraQ Location: 221965-222862 bp Feature: domain Description: YraQ Location: 221 965-222862 bp Feature: gene Location: 222864-223676 bp Feature: domain Description: YcgQ Location: 222867-223674 bp Feature: domain Description: YcgQ Location: 222867-223674 bp Feature: gene Location: 223742-225019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 223946-224561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 223946-224561 bp Feature: domain Description: GIIM Note: maturase Location: 224615-224831 bp Feature: domain Description: GIIM Note: maturase Location: 22461 5-224831 bp Feature: gene Location: 225570-227180 bp Feature: domain Description: PRK10416 Location: 225909-227169 bp Feature: domain Description: PRK1 041 6 Location: 225909-2271 69 bp Feature: gene Location: 227180-228004 bp Feature: domain Description: Cof Location: 227189-227990 bp Feature: domain Description: Cof Location: 2271 89-227990 bp Feature: gene Location: 311280-314081 bp Feature: domain Description: Peptidase_M23 Location: 312723-312936 bp Feature: domain Description: Peptidase_M23 Location: 31 2723-31 2936 bp Feature: domain Description: Phage_lysozyme2 Location: 313077-313590 bp Feature: domain Description: Phage_lysozyme2 Location: 31 3077-31 3590 bp Feature: domain Description: PRK08581 Location: 313707-314043 bp Feature: domain Description: PRK08581 Location: 31 3707-31 4043 bp Feature: gene Location: 314083-315117 bp Feature: domain Description: TraC-F-type Location: 314248-314944 bp Feature: domain Description: TraC-F-type Location: 31 4248-31 4944 bp Feature: gene Location: 315050-316756 bp Feature: RT Description: RVT_N Location: 315155-315395 bp Feature: RT Description: RVT_N Location: 31 51 55-31 5395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 315443-316103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 5443-31 61 03 bp Feature: domain Description: GIIM Note: maturase Location: 316172-316391 bp Feature: domain Description: GIIM Note: maturase Location: 31 61 72-31 6391 bp Feature: gene Location: 317252-318745 bp Feature: domain Description: TraC-F-type Location: 318029-318431 bp Feature: domain Description: TraC-F-type Location: 31 8029-31 8431 bp Feature: gene Location: 318702-319055 bp Feature: domain Description: PrgI Location: 318714-318987 bp Feature: domain Description: PrgI Location: 31 871 4-31 8987 bp Feature: gene Location: 368071-369264 bp Feature: domain Description: PRK05764 Location: 368077-369250 bp Feature: domain Description: PRK05764 Location: 368077-369250 bp Feature: gene Location: 369350-371815 bp Feature: domain Description: PRK07246 Location: 369353-371813 bp Feature: domain Description: PRK07246 Location: 369353-371 81 3 bp Feature: gene Location: 371982-373259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 372186-372801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3721 86-372801 bp Feature: domain Description: GIIM Note: maturase Location: 372855-373071 bp Feature: domain Description: GIIM Note: maturase Location: 372855-373071 bp Feature: gene Location: 373624-373797 bp Feature: gene Location: 373822-374595 bp Feature: domain Description: PRK08643 Location: 373834-374593 bp Feature: domain Description: PRK08643 Location: 373834-374593 bp Feature: gene Location: 429821-430201 bp Feature: domain Description: RHOD Location: 429950-430184 bp Feature: domain Description: RHOD Location: 429950-4301 84 bp Feature: gene Location: 430213-430812 bp Feature: domain Description: ROK_glcA_fam Location: 430369-430801 bp Feature: domain Description: ROK_glcA_fam Location: 430369-430801 bp Feature: gene Location: 430745-432451 bp Feature: RT Description: RVT_N Location: 430850-431090 bp Feature: RT Description: RVT_N Location: 430850-431 090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431138-431798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431 1 38-431 798 bp Feature: domain Description: GIIM Note: maturase Location: 431867-432086 bp Feature: domain Description: GIIM Note: maturase Location: 431 867-432086 bp Feature: gene Location: 432947-433492 bp Feature: domain Description: ROK_glcA_fam Location: 432965-433472 bp Feature: domain Description: ROK_glcA_fam Location: 432965-433472 bp Feature: gene Location: 433489-433698 bp Feature: domain Description: YqgQ Location: 433492-433690 bp Feature: domain Description: YqgQ Location: 433492-433690 bp Feature: gene Location: 520243-520542 bp Feature: gene Location: 520612-521421 bp Feature: gene Location: 521555-523405 bp Feature: RT Description: RVT_N Location: 521792-522035 bp Feature: RT Description: RVT_N Location: 521 792-522035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 522080-522728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 522080-522728 bp Feature: domain Description: GIIM Note: maturase Location: 522785-523013 bp Feature: domain Description: GIIM Note: maturase Location: 522785-52301 3 bp Feature: gene Location: 523773-529769 bp Feature: domain Description: N6_Mtase Location: 525783-526374 bp Feature: domain Description: N6_Mtase Location: 525783-526374 bp Feature: domain Description: COG4646 Location: 526965-529272 bp Feature: domain Description: COG4646 Location: 526965-529272 bp Feature: domain Description: KOG0390 Location: 529539-529740 bp Feature: domain Description: KOG0390 Location: 529539-529740 bp Feature: gene Location: 529819-530370 bp Feature: gene Location: 545461-548265 bp Feature: domain Description: Peptidase_M23 Location: 546907-547111 bp Feature: domain Description: Peptidase_M23 Location: 546907-5471 1 1 bp Feature: domain Description: Phage_lysozyme2 Location: 547264-547774 bp Feature: domain Description: Phage_lysozyme2 Location: 547264-547774 bp Feature: domain Description: PRK08581 Location: 547891-548224 bp Feature: domain Description: PRK08581 Location: 547891 -548224 bp Feature: gene Location: 548262-549302 bp Feature: domain Description: TraC-F-type Location: 548427-549123 bp Feature: domain Description: TraC-F-type Location: 548427-5491 23 bp Feature: gene Location: 549235-550941 bp Feature: RT Description: RVT_N Location: 549340-549580 bp Feature: RT Description: RVT_N Location: 549340-549580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 549628-550288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 549628-550288 bp Feature: domain Description: GIIM Note: maturase Location: 550357-550576 bp Feature: domain Description: GIIM Note: maturase Location: 550357-550576 bp Feature: gene Location: 551437-552924 bp Feature: domain Description: TraC-F-type Location: 552220-552610 bp Feature: domain Description: TraC-F-type Location: 552220-55261 0 bp Feature: gene Location: 552881-553234 bp Feature: domain Description: PrgI Location: 552893-553148 bp Feature: domain Description: PrgI Location: 552893-5531 48 bp Feature: gene Location: 652611-653912 bp Feature: domain Description: CelB Location: 652617-653898 bp Feature: domain Description: CelB Location: 65261 7-653898 bp Feature: gene Location: 653914-654234 bp Feature: domain Description: CelA Location: 653917-654214 bp Feature: domain Description: CelA Location: 65391 7-65421 4 bp Feature: gene Location: 654865-656571 bp Feature: RT Description: RVT_N Location: 654970-655210 bp Feature: RT Description: RVT_N Location: 654970-65521 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 655258-655918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 655258-65591 8 bp Feature: domain Description: GIIM Note: maturase Location: 655987-656206 bp Feature: domain Description: GIIM Note: maturase Location: 655987-656206 bp Feature: gene Location: 656643-656885 bp Feature: domain Description: CelC Location: 656661-656871 bp Feature: domain Description: CelC Location: 656661 -656871 bp Feature: gene Location: 657089-658078 bp Feature: domain Description: DeoR Location: 657098-658040 bp Feature: domain Description: DeoR Location: 657098-658040 bp Feature: gene Location: 742553-745216 bp Feature: domain Description: Peptidase_M23 Location: 743789-743996 bp Feature: domain Description: Peptidase_M23 Location: 743789-743996 bp Feature: domain Description: Phage_lysozyme2 Location: 744227-744746 bp Feature: domain Description: Phage_lysozyme2 Location: 744227-744746 bp Feature: domain Description: PRK08581 Location: 744863-745157 bp Feature: domain Description: PRK08581 Location: 744863-7451 57 bp Feature: gene Location: 745274-746329 bp Feature: domain Description: TraC-F-type Location: 745454-746159 bp Feature: domain Description: TraC-F-type Location: 745454-7461 59 bp Feature: gene Location: 746262-747968 bp Feature: RT Description: RVT_N Location: 746367-746607 bp Feature: RT Description: RVT_N Location: 746367-746607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 746655-747315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 746655-74731 5 bp Feature: domain Description: GIIM Note: maturase Location: 747384-747603 bp Feature: domain Description: GIIM Note: maturase Location: 747384-747603 bp Feature: gene Location: 748464-749981 bp Feature: domain Description: TraC-F-type Location: 748815-749886 bp Feature: domain Description: TraC-F-type Location: 74881 5-749886 bp Feature: gene Location: 749926-750282 bp Feature: domain Description: PrgI Location: 749956-750181 bp Feature: domain Description: PrgI Location: 749956-7501 81 bp Feature: gene Location: 955084-955776 bp Feature: domain Description: PhoE Location: 955093-955753 bp Feature: domain Description: PhoE Location: 955093-955753 bp Feature: gene Location: 955899-956378 bp Feature: domain Description: PRK08295 Location: 955911-956139 bp Feature: domain Description: PRK08295 Location: 95591 1 -9561 39 bp Feature: gene Location: 956594-957871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 956798-957413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 956798-95741 3 bp Feature: domain Description: GIIM Note: maturase Location: 957467-957683 bp Feature: domain Description: GIIM Note: maturase Location: 957467-957683 bp Feature: gene Location: 958435-958854 bp Feature: domain Description: DUF2992 Location: 958444-958852 bp Feature: domain Description: DUF2992 Location: 958444-958852 bp Feature: gene Location: 959074-959625 bp Feature: domain Description: NTP_transf_6 Location: 959134-959614 bp Feature: domain Description: NTP_transf_6 Location: 9591 34-95961 4 bp Feature: gene Location: 1004238-1005215 bp Feature: domain Description: AXE1 Location: 1004250-1005168 bp Feature: domain Description: AXE1 Location: 1 004250-1 0051 68 bp Feature: gene Location: 1005223-1006032 bp Feature: domain Description: NagC Location: 1005397-1006024 bp Feature: domain Description: NagC Location: 1 005397-1 006024 bp Feature: gene Location: 1005965-1007671 bp Feature: RT Description: RVT_N Location: 1006070-1006310 bp Feature: RT Description: RVT_N Location: 1 006070-1 00631 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1006358-1007018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 006358-1 00701 8 bp Feature: domain Description: GIIM Note: maturase Location: 1007087-1007306 bp Feature: domain Description: GIIM Note: maturase Location: 1 007087-1 007306 bp Feature: gene Location: 1008167-1008415 bp Feature: domain Description: NagC Location: 1008170-1008395 bp Feature: domain Description: NagC Location: 1 0081 70-1 008395 bp Feature: gene Location: 1008432-1009349 bp Feature: domain Description: NAL Location: 1008453-1009317 bp Feature: domain Description: NAL Location: 1 008453-1 00931 7 bp Feature: gene Location: 1201819-1202814 bp Feature: domain Description: BaeS Location: 1201957-1202797 bp Feature: domain Description: BaeS Location: 1 201 957-1 202797 bp Feature: gene Location: 1202907-1203515 bp Feature: gene Location: 1203593-1204870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1203797-1204412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 203797-1 20441 2 bp Feature: domain Description: GIIM Note: maturase Location: 1204466-1204682 bp Feature: domain Description: GIIM Note: maturase Location: 1 204466-1 204682 bp Feature: gene Location: 1205459-1207960 bp Feature: domain Description: PLN02563 Location: 1205468-1207958 bp Feature: domain Description: PLN02563 Location: 1 205468-1 207958 bp Feature: gene Location: 1208337-1209584 bp Feature: domain Description: MFS_MucK Location: 1208382-1209513 bp Feature: domain Description: MFS_MucK Location: 1 208382-1 20951 3 bp Feature: gene Location: 1610434-1611744 bp Feature: domain Description: Der Location: 1610437-1611742 bp Feature: domain Description: Der Location: 1 61 0437-1 61 1 742 bp Feature: gene Location: 1611900-1614998 bp Feature: domain Description: HepA Location: 1613298-1614990 bp Feature: domain Description: HepA Location: 1 61 3298-1 61 4990 bp Feature: gene Location: 1615538-1616848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1615775-1616390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 61 5775-1 61 6390 bp Feature: domain Description: GIIM Note: maturase Location: 1616444-1616660 bp Feature: domain Description: GIIM Note: maturase Location: 1 61 6444-1 61 6660 bp Feature: gene Location: 1617020-1617637 bp Feature: gene Location: 1617647-1618978 bp Feature: domain Description: MurC Location: 1617656-1618952 bp Feature: domain Description: MurC Location: 1 61 7656-1 61 8952 bp Feature: gene Location: 1666631-1667380 bp Feature: domain Description: PHA02517 Location: 1666643-1667375 bp Feature: domain Description: PHA0251 7 Location: 1 666643-1 667375 bp Feature: gene Location: 1667500-1667775 bp Feature: domain Description: InsE Location: 1667512-1667761 bp Feature: domain Description: InsE Location: 1 66751 2-1 667761 bp Feature: gene Location: 1668144-1669454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1668381-1668996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 668381 -1 668996 bp Feature: domain Description: GIIM Note: maturase Location: 1669050-1669266 bp Feature: domain Description: GIIM Note: maturase Location: 1 669050-1 669266 bp Feature: gene Location: 1669820-1670515 bp Feature: domain Description: PolyPPase_VTC_like Location: 1669838-1670480 bp Feature: domain Description: PolyPPase_VTC_like Location: 1 669838-1 670480 bp Feature: gene Location: 1670567-1671244 bp Feature: domain Description: DUF4956 Location: 1670654-1671017 bp Feature: domain Description: DUF4956 Location: 1 670654-1 671 01 7 bp Feature: gene Location: 1743834-1743992 bp Feature: gene Location: 1744085-1744435 bp Feature: gene Location: 1744615-1745892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1744819-1745434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 74481 9-1 745434 bp Feature: domain Description: GIIM Note: maturase Location: 1745488-1745704 bp Feature: domain Description: GIIM Note: maturase Location: 1 745488-1 745704 bp Feature: gene Location: 1746257-1746424 bp Feature: gene Location: 1746442-1747182 bp Feature: domain Description: GlnQ Location: 1746460-1747171 bp Feature: domain Description: GlnQ Location: 1 746460-1 7471 71 bp Feature: gene Location: 2103711-2105444 bp Feature: domain Description: MdlB Location: 2103747-2105439 bp Feature: domain Description: MdlB Location: 21 03747-21 05439 bp Feature: gene Location: 2105458-2105655 bp Feature: gene Location: 2105746-2107023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2105950-2106565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 05950-21 06565 bp Feature: domain Description: GIIM Note: maturase Location: 2106619-2106835 bp Feature: domain Description: GIIM Note: maturase Location: 21 0661 9-21 06835 bp Feature: gene Location: 2107575-2109293 bp Feature: domain Description: PGM2 Location: 2107692-2109267 bp Feature: domain Description: PGM2 Location: 21 07692-21 09267 bp Feature: gene Location: 2109403-2109975 bp Feature: domain Description: COG4684 Location: 2109406-2109970 bp Feature: domain Description: COG4684 Location: 21 09406-21 09970 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MurE (COG0769), COG3442 (Glutamine amidotransferase related to the GATase domain of CobQ ), RVT-GII, GIIM (pfam08388), lipoyltrans (TIGR00545), YraQ (COG0701), YcgQ (COG3689), PRK10416 (signal recognition particle-docking protein FtsY; Provisional), Cof (COG0561), Peptidase_M23 (pfam01551)
Phage_lysozyme2 (pfam18013), PRK08581 (amidase domain-containing protein), TraC-F-type (TIGR02746), RVT_N (pfam13655), PrgI (pfam12666), PRK05764 (aspartate aminotransferase; Provisional), PRK07246 (bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated), PRK08643 ((S)-acetoin forming diacetyl reductase), RHOD (smart00450), ROK_glcA_fam (TIGR00744)
YqgQ (COG4483), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG0390 (KOG0390, DNA repair protein, SNF2 family ), CelB (COG1455), CelA (TIGR03030), CelC (COG1447), DeoR (COG2390), PhoE (COG0406), PRK08295 (RNA polymerase sporulation sigma factor SigH)
DUF2992 (pfam11208), NTP_transf_6 (pfam06042), AXE1 (pfam05448), NagC (COG1940), NAL (cd00954), BaeS (COG0642), PLN02563 (aminoacyl-tRNA ligase), MFS_MucK (cd17371), Der (COG1160), HepA (COG0553)
MurC (COG0773), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), PolyPPase_VTC_like (cd07750), DUF4956 (pfam16316), GlnQ (COG1126), MdlB (COG1132), PGM2 (cd05799), COG4684 (Uncharacterized membrane protein )