myRT

myRT report for GCA_900458975.1_43651_H01

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Seq: UHEM01000002.1 Streptococcus agalactiae strain NCTC8180 genome assembly, contig: ERS1022032SCcontig000002, whole genome shotgun sequence (2242135 bp)
Overview 1 RT 1: 127555-132073 bp 2 RT 2: 411362-416817 bp 3 RT 3: 627498-634026 bp 4 RT 4: 782797-788837 bp 5 RT 5: 958500-963577 bp 6 RT 6: 1129786-1136045 bp 7 RT 7: 1333007-1344635 bp 8 RT 8: 1353867-1361556 bp 9 RT 9: 1543108-1546456 bp 10 RT 10: 1562859-1568574 bp 11 RT 11: 1634928-1642149 bp 12 RT 12: 1685935-1694476 bp 13 RT 13: 1904985-1912615 bp Neighborhood of RT #1 [127555, 132096] NTP_transf_6 DUF2992 RVT-GII GIIM PRK08295 PhoE Neighborhood of RT #2 [411362, 416831] DeoR CelC RVT_N RVT-GII GIIM CelA CelB Neighborhood of RT #3 [627498, 634040] PRK08643 RVT-GII GIIM PRK07246 PRK05764 Neighborhood of RT #4 [782797, 788839] Cof PRK10416 RVT-GII GIIM YcgQ YraQ Neighborhood of RT #5 [958500, 963582] lipoyltrans RVT-GII GIIM COG3442 MurE Neighborhood of RT #6 [1129786, 1136050] COG4684 PGM2 RVT-GII GIIM MdlB Neighborhood of RT #7 [1333007, 1345039] RVT_N RVT-GII GIIM RVT-GII Intron_maturas2 N6_Mtase COG4646 Neighborhood of RT #8 [1353867, 1361639] Peptidase_M23 Phage_lysozyme2 PRK08581 TraC-F-type RVT_N RVT-GII GIIM TraC-F-type PrgI Neighborhood of RT #9 [1543108, 1546456] GlnQ RVT-GII GIIM Neighborhood of RT #10 [1562859, 1568582] CcmA RVT-GII GIIM coaE fpg Neighborhood of RT #11 [1634928, 1642154] DUF4956 PolyPPase_VTC_like RVT-GII GIIM Branch_AA_trans PRK12267 Neighborhood of RT #12 [1685935, 1694478] MurC RVT-GII GIIM HepA Der Neighborhood of RT #13 [1904985, 1912716] Peptidase_M23 Phage_lysozyme2 PRK08581 TraC-F-type RVT_N RVT-GII GIIM TraC-F-type PrgI Feature: gene Location: 127555-128106 bp Feature: domain Description: NTP_transf_6 Location: 127615-128095 bp Feature: domain Description: NTP_transf_6 Location: 1 2761 5-1 28095 bp Feature: gene Location: 128326-128745 bp Feature: domain Description: DUF2992 Location: 128335-128743 bp Feature: domain Description: DUF2992 Location: 1 28335-1 28743 bp Feature: gene Location: 129276-130586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129513-130128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2951 3-1 301 28 bp Feature: domain Description: GIIM Note: maturase Location: 130182-130398 bp Feature: domain Description: GIIM Note: maturase Location: 1 301 82-1 30398 bp Feature: gene Location: 130802-131281 bp Feature: domain Description: PRK08295 Location: 130814-130937 bp Feature: domain Description: PRK08295 Location: 1 3081 4-1 30937 bp Feature: gene Location: 131404-132096 bp Feature: domain Description: PhoE Location: 131413-132073 bp Feature: domain Description: PhoE Location: 1 31 41 3-1 32073 bp Feature: gene Location: 411362-412351 bp Feature: domain Description: DeoR Location: 411371-412313 bp Feature: domain Description: DeoR Location: 41 1 371 -41 231 3 bp Feature: gene Location: 412555-412788 bp Feature: domain Description: CelC Location: 412573-412783 bp Feature: domain Description: CelC Location: 41 2573-41 2783 bp Feature: gene Location: 412869-414566 bp Feature: RT Description: RVT_N Location: 412965-413205 bp Feature: RT Description: RVT_N Location: 41 2965-41 3205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413253-413913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 3253-41 391 3 bp Feature: domain Description: GIIM Note: maturase Location: 413982-414201 bp Feature: domain Description: GIIM Note: maturase Location: 41 3982-41 4201 bp Feature: gene Location: 415208-415528 bp Feature: domain Description: CelA Location: 415211-415508 bp Feature: domain Description: CelA Location: 41 521 1 -41 5508 bp Feature: gene Location: 415530-416831 bp Feature: domain Description: CelB Location: 415536-416817 bp Feature: domain Description: CelB Location: 41 5536-41 681 7 bp Feature: gene Location: 627498-628289 bp Feature: domain Description: PRK08643 Location: 627528-628287 bp Feature: domain Description: PRK08643 Location: 627528-628287 bp Feature: gene Location: 628314-628487 bp Feature: gene Location: 628819-630129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 629056-629671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 629056-629671 bp Feature: domain Description: GIIM Note: maturase Location: 629725-629941 bp Feature: domain Description: GIIM Note: maturase Location: 629725-629941 bp Feature: gene Location: 630296-632761 bp Feature: domain Description: PRK07246 Location: 630299-632759 bp Feature: domain Description: PRK07246 Location: 630299-632759 bp Feature: gene Location: 632847-634040 bp Feature: domain Description: PRK05764 Location: 632853-634026 bp Feature: domain Description: PRK05764 Location: 632853-634026 bp Feature: gene Location: 782797-783621 bp Feature: domain Description: Cof Location: 782806-783607 bp Feature: domain Description: Cof Location: 782806-783607 bp Feature: gene Location: 783621-785231 bp Feature: domain Description: PRK10416 Location: 783960-785220 bp Feature: domain Description: PRK1 041 6 Location: 783960-785220 bp Feature: gene Location: 785749-787059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 785986-786601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 785986-786601 bp Feature: domain Description: GIIM Note: maturase Location: 786655-786871 bp Feature: domain Description: GIIM Note: maturase Location: 786655-786871 bp Feature: gene Location: 787125-787937 bp Feature: domain Description: YcgQ Location: 787128-787935 bp Feature: domain Description: YcgQ Location: 7871 28-787935 bp Feature: gene Location: 787937-788839 bp Feature: domain Description: YraQ Location: 787940-788837 bp Feature: domain Description: YraQ Location: 787940-788837 bp Feature: gene Location: 958500-959489 bp Feature: domain Description: lipoyltrans Location: 958515-959463 bp Feature: domain Description: lipoyltrans Location: 95851 5-959463 bp Feature: gene Location: 959537-959746 bp Feature: gene Location: 960078-961388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 960315-960930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96031 5-960930 bp Feature: domain Description: GIIM Note: maturase Location: 960984-961200 bp Feature: domain Description: GIIM Note: maturase Location: 960984-961 200 bp Feature: gene Location: 961454-962125 bp Feature: domain Description: COG3442 Location: 961457-962114 bp Feature: domain Description: COG3442 Location: 961 457-9621 1 4 bp Feature: gene Location: 962239-963582 bp Feature: domain Description: MurE Location: 962272-963577 bp Feature: domain Description: MurE Location: 962272-963577 bp Feature: gene Location: 1129786-1130358 bp Feature: domain Description: COG4684 Location: 1129789-1130353 bp Feature: domain Description: COG4684 Location: 1 1 29789-1 1 30353 bp Feature: gene Location: 1130468-1132186 bp Feature: domain Description: PGM2 Location: 1130585-1132160 bp Feature: domain Description: PGM2 Location: 1 1 30585-1 1 321 60 bp Feature: gene Location: 1132705-1134015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1132942-1133557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 32942-1 1 33557 bp Feature: domain Description: GIIM Note: maturase Location: 1133611-1133827 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 3361 1 -1 1 33827 bp Feature: gene Location: 1134106-1134303 bp Feature: gene Location: 1134317-1136050 bp Feature: domain Description: MdlB Location: 1134353-1136045 bp Feature: domain Description: MdlB Location: 1 1 34353-1 1 36045 bp Feature: gene Location: 1333007-1333306 bp Feature: gene Location: 1333376-1334185 bp Feature: gene Location: 1334319-1335977 bp Feature: RT Description: RVT_N Location: 1334364-1334607 bp Feature: RT Description: RVT_N Location: 1 334364-1 334607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1334652-1335300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 334652-1 335300 bp Feature: domain Description: GIIM Note: maturase Location: 1335357-1335585 bp Feature: domain Description: GIIM Note: maturase Location: 1 335357-1 335585 bp Feature: gene Location: 1336761-1338572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1337025-1337847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 337025-1 337847 bp Feature: domain Description: Intron_maturas2 Location: 1337916-1338393 bp Feature: domain Description: Intron_maturas2 Location: 1 33791 6-1 338393 bp Feature: gene Location: 1338812-1339012 bp Feature: gene Location: 1339136-1345039 bp Feature: domain Description: N6_Mtase Location: 1341146-1341734 bp Feature: domain Description: N6_Mtase Location: 1 341 1 46-1 341 734 bp Feature: domain Description: COG4646 Location: 1342328-1344635 bp Feature: domain Description: COG4646 Location: 1 342328-1 344635 bp Feature: gene Location: 1353867-1356671 bp Feature: domain Description: Peptidase_M23 Location: 1355313-1355523 bp Feature: domain Description: Peptidase_M23 Location: 1 35531 3-1 355523 bp Feature: domain Description: Phage_lysozyme2 Location: 1355670-1356180 bp Feature: domain Description: Phage_lysozyme2 Location: 1 355670-1 3561 80 bp Feature: domain Description: PRK08581 Location: 1356297-1356630 bp Feature: domain Description: PRK08581 Location: 1 356297-1 356630 bp Feature: gene Location: 1356668-1357708 bp Feature: domain Description: TraC-F-type Location: 1356833-1357529 bp Feature: domain Description: TraC-F-type Location: 1 356833-1 357529 bp Feature: gene Location: 1357641-1359338 bp Feature: RT Description: RVT_N Location: 1357737-1357977 bp Feature: RT Description: RVT_N Location: 1 357737-1 357977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1358025-1358685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 358025-1 358685 bp Feature: domain Description: GIIM Note: maturase Location: 1358754-1358973 bp Feature: domain Description: GIIM Note: maturase Location: 1 358754-1 358973 bp Feature: gene Location: 1359848-1361329 bp Feature: domain Description: TraC-F-type Location: 1360169-1361015 bp Feature: domain Description: TraC-F-type Location: 1 3601 69-1 361 01 5 bp Feature: gene Location: 1361286-1361639 bp Feature: domain Description: PrgI Location: 1361298-1361556 bp Feature: domain Description: PrgI Location: 1 361 298-1 361 556 bp Feature: gene Location: 1543108-1543848 bp Feature: domain Description: GlnQ Location: 1543126-1543837 bp Feature: domain Description: GlnQ Location: 1 5431 26-1 543837 bp Feature: gene Location: 1543866-1544033 bp Feature: gene Location: 1544365-1545675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1544602-1545217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 544602-1 54521 7 bp Feature: domain Description: GIIM Note: maturase Location: 1545271-1545487 bp Feature: domain Description: GIIM Note: maturase Location: 1 545271 -1 545487 bp Feature: gene Location: 1545855-1546205 bp Feature: gene Location: 1546298-1546456 bp Feature: gene Location: 1562859-1564505 bp Feature: gene Location: 1564495-1565196 bp Feature: domain Description: CcmA Location: 1564504-1565131 bp Feature: domain Description: CcmA Location: 1 564504-1 5651 31 bp Feature: gene Location: 1565347-1566624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1565551-1566166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 565551 -1 5661 66 bp Feature: domain Description: GIIM Note: maturase Location: 1566220-1566436 bp Feature: domain Description: GIIM Note: maturase Location: 1 566220-1 566436 bp Feature: gene Location: 1567177-1567662 bp Feature: domain Description: coaE Location: 1567183-1567657 bp Feature: domain Description: coaE Location: 1 5671 83-1 567657 bp Feature: gene Location: 1567761-1568582 bp Feature: domain Description: fpg Location: 1567767-1568574 bp Feature: domain Description: fpg Location: 1 567767-1 568574 bp Feature: gene Location: 1634928-1635605 bp Feature: domain Description: DUF4956 Location: 1635015-1635378 bp Feature: domain Description: DUF4956 Location: 1 63501 5-1 635378 bp Feature: gene Location: 1635657-1636352 bp Feature: domain Description: PolyPPase_VTC_like Location: 1635675-1636317 bp Feature: domain Description: PolyPPase_VTC_like Location: 1 635675-1 63631 7 bp Feature: gene Location: 1636719-1637996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1636923-1637538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 636923-1 637538 bp Feature: domain Description: GIIM Note: maturase Location: 1637592-1637808 bp Feature: domain Description: GIIM Note: maturase Location: 1 637592-1 637808 bp Feature: gene Location: 1638573-1639910 bp Feature: domain Description: Branch_AA_trans Location: 1638582-1639866 bp Feature: domain Description: Branch_AA_trans Location: 1 638582-1 639866 bp Feature: gene Location: 1640106-1642154 bp Feature: domain Description: PRK12267 Location: 1640166-1642149 bp Feature: domain Description: PRK1 2267 Location: 1 6401 66-1 6421 49 bp Feature: gene Location: 1685935-1687266 bp Feature: domain Description: MurC Location: 1685944-1687240 bp Feature: domain Description: MurC Location: 1 685944-1 687240 bp Feature: gene Location: 1687276-1687893 bp Feature: gene Location: 1688065-1689342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1688269-1688884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 688269-1 688884 bp Feature: domain Description: GIIM Note: maturase Location: 1688938-1689154 bp Feature: domain Description: GIIM Note: maturase Location: 1 688938-1 6891 54 bp Feature: gene Location: 1689915-1693013 bp Feature: domain Description: HepA Location: 1691472-1693005 bp Feature: domain Description: HepA Location: 1 691 472-1 693005 bp Feature: gene Location: 1693168-1694478 bp Feature: domain Description: Der Location: 1693171-1694476 bp Feature: domain Description: Der Location: 1 6931 71 -1 694476 bp Feature: gene Location: 1904985-1907648 bp Feature: domain Description: Peptidase_M23 Location: 1906221-1906428 bp Feature: domain Description: Peptidase_M23 Location: 1 906221 -1 906428 bp Feature: domain Description: Phage_lysozyme2 Location: 1906659-1907178 bp Feature: domain Description: Phage_lysozyme2 Location: 1 906659-1 9071 78 bp Feature: domain Description: PRK08581 Location: 1907295-1907589 bp Feature: domain Description: PRK08581 Location: 1 907295-1 907589 bp Feature: gene Location: 1907706-1908761 bp Feature: domain Description: TraC-F-type Location: 1907883-1908591 bp Feature: domain Description: TraC-F-type Location: 1 907883-1 908591 bp Feature: gene Location: 1908694-1910391 bp Feature: RT Description: RVT_N Location: 1908790-1909030 bp Feature: RT Description: RVT_N Location: 1 908790-1 909030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1909078-1909738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 909078-1 909738 bp Feature: domain Description: GIIM Note: maturase Location: 1909807-1910026 bp Feature: domain Description: GIIM Note: maturase Location: 1 909807-1 91 0026 bp Feature: gene Location: 1910901-1912415 bp Feature: domain Description: TraC-F-type Location: 1911282-1912323 bp Feature: domain Description: TraC-F-type Location: 1 91 1 282-1 91 2323 bp Feature: gene Location: 1912360-1912716 bp Feature: domain Description: PrgI Location: 1912390-1912615 bp Feature: domain Description: PrgI Location: 1 91 2390-1 91 261 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transf_6 (pfam06042), DUF2992 (pfam11208), RVT-GII, GIIM (pfam08388), PRK08295 (RNA polymerase sporulation sigma factor SigH), PhoE (COG0406), DeoR (COG2390), CelC (COG1447), RVT_N (pfam13655), CelA (TIGR03030)
CelB (COG1455), PRK08643 ((S)-acetoin forming diacetyl reductase), PRK07246 (bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated), PRK05764 (aspartate aminotransferase; Provisional), Cof (COG0561), PRK10416 (signal recognition particle-docking protein FtsY; Provisional), YcgQ (COG3689), YraQ (COG0701), lipoyltrans (TIGR00545), COG3442 (Glutamine amidotransferase related to the GATase domain of CobQ )
MurE (COG0769), COG4684 (Uncharacterized membrane protein ), PGM2 (cd05799), MdlB (COG1132), Intron_maturas2 (pfam01348), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), PRK08581 (amidase domain-containing protein)
TraC-F-type (TIGR02746), PrgI (pfam12666), GlnQ (COG1126), CcmA (COG4133), coaE (PRK14734), fpg (TIGR00577), DUF4956 (pfam16316), PolyPPase_VTC_like (cd07750), Branch_AA_trans (pfam05525), PRK12267 (methionyl-tRNA synthetase; Reviewed)
MurC (COG0773), HepA (COG0553), Der (COG1160)