myRT

myRT report for GCA_900459015.1_43874_F01

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Seq: UHEO01000001.1 Streptococcus agalactiae strain NCTC6175 genome assembly, contig: ERS1037083SCcontig000001, whole genome shotgun sequence (2052590 bp)
Overview 1 RT 1: 373886-379445 bp 2 RT 2: 864278-874406 bp 3 RT 3: 974363-979778 bp 4 RT 4: 1116265-1122305 bp 5 RT 5: 1285420-1290456 bp Neighborhood of RT #1 [373886, 379525] TatD 5S_RNA_mat_M5 RVT-Retrons ksgA rrmA Neighborhood of RT #2 [864278, 874406] N6_Mtase COG4646 KOG0390 RVT_N RVT-GII GIIM Neighborhood of RT #3 [974363, 979795] HTH_Tnp_4 Relaxase RVT-GII RVT-GII group_II_RT_mat Relaxase ParB_N_like_MT YhdJ Neighborhood of RT #4 [1116265, 1122307] Cof PRK10416 RVT-GII GIIM YcgQ YraQ Neighborhood of RT #5 [1285420, 1290461] lipoyltrans RVT-GII GIIM COG3442 MurE Feature: gene Location: 373886-374740 bp Feature: domain Description: TatD Location: 373967-374723 bp Feature: domain Description: TatD Location: 373967-374723 bp Feature: gene Location: 374724-375293 bp Feature: domain Description: 5S_RNA_mat_M5 Location: 374745-375270 bp Feature: domain Description: 5S_RNA_mat_M5 Location: 374745-375270 bp Feature: gene Location: 375552-377537 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 375708-376344 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 375708-376344 bp Feature: gene Location: 377768-378670 bp Feature: domain Description: ksgA Location: 377822-378659 bp Feature: domain Description: ksgA Location: 377822-378659 bp Feature: gene Location: 378674-379525 bp Feature: domain Description: rrmA Location: 378722-379445 bp Feature: domain Description: rrmA Location: 378722-379445 bp Feature: gene Location: 864278-864829 bp Feature: gene Location: 864880-870876 bp Feature: domain Description: N6_Mtase Location: 866890-867481 bp Feature: domain Description: N6_Mtase Location: 866890-867481 bp Feature: domain Description: COG4646 Location: 868072-870379 bp Feature: domain Description: COG4646 Location: 868072-870379 bp Feature: domain Description: KOG0390 Location: 870646-870847 bp Feature: domain Description: KOG0390 Location: 870646-870847 bp Feature: gene Location: 871436-873094 bp Feature: domain Description: RVT_N Location: 871481-871724 bp Feature: domain Description: RVT_N Location: 871 481 -871 724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 871769-872417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 871 769-87241 7 bp Feature: domain Description: GIIM Note: maturase Location: 872474-872702 bp Feature: domain Description: GIIM Note: maturase Location: 872474-872702 bp Feature: gene Location: 873228-874037 bp Feature: gene Location: 874107-874406 bp Feature: gene Location: 974363-974746 bp Feature: domain Description: HTH_Tnp_4 Location: 974504-974654 bp Feature: domain Description: HTH_Tnp_4 Location: 974504-974654 bp Feature: gene Location: 974754-974906 bp Feature: domain Description: Relaxase Location: 974781-974871 bp Feature: domain Description: Relaxase Location: 974781 -974871 bp Feature: gene Location: 975443-976261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 975719-976145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97571 9-9761 45 bp Feature: gene Location: 976308-977246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 976332-976524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 976332-976524 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 976731-976863 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 976731 -976863 bp Feature: gene Location: 977571-978551 bp Feature: domain Description: Relaxase Location: 977577-977730 bp Feature: domain Description: Relaxase Location: 977577-977730 bp Feature: gene Location: 978548-979795 bp Feature: domain Description: ParB_N_like_MT Location: 978575-978830 bp Feature: domain Description: ParB_N_like_MT Location: 978575-978830 bp Feature: domain Description: YhdJ Location: 978992-979778 bp Feature: domain Description: YhdJ Location: 978992-979778 bp Feature: gene Location: 1116265-1117089 bp Feature: domain Description: Cof Location: 1116277-1117075 bp Feature: domain Description: Cof Location: 1 1 1 6277-1 1 1 7075 bp Feature: gene Location: 1117089-1118699 bp Feature: domain Description: PRK10416 Location: 1117374-1118688 bp Feature: domain Description: PRK1 041 6 Location: 1 1 1 7374-1 1 1 8688 bp Feature: gene Location: 1119217-1120527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1119454-1120069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 9454-1 1 20069 bp Feature: domain Description: GIIM Note: maturase Location: 1120123-1120339 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 201 23-1 1 20339 bp Feature: gene Location: 1120593-1121405 bp Feature: domain Description: YcgQ Location: 1120596-1121403 bp Feature: domain Description: YcgQ Location: 1 1 20596-1 1 21 403 bp Feature: gene Location: 1121405-1122307 bp Feature: domain Description: YraQ Location: 1121408-1122305 bp Feature: domain Description: YraQ Location: 1 1 21 408-1 1 22305 bp Feature: gene Location: 1285420-1286409 bp Feature: domain Description: lipoyltrans Location: 1285435-1286383 bp Feature: domain Description: lipoyltrans Location: 1 285435-1 286383 bp Feature: gene Location: 1286434-1286625 bp Feature: gene Location: 1286957-1288267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1287194-1287809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2871 94-1 287809 bp Feature: domain Description: GIIM Note: maturase Location: 1287863-1288079 bp Feature: domain Description: GIIM Note: maturase Location: 1 287863-1 288079 bp Feature: gene Location: 1288333-1289004 bp Feature: domain Description: COG3442 Location: 1288336-1288993 bp Feature: domain Description: COG3442 Location: 1 288336-1 288993 bp Feature: gene Location: 1289118-1290461 bp Feature: domain Description: MurE Location: 1289151-1290456 bp Feature: domain Description: MurE Location: 1 2891 51 -1 290456 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TatD (COG0084), 5S_RNA_mat_M5 (TIGR00334), RVT-Retrons, ksgA (TIGR00755), rrmA (PRK11088), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG0390 (KOG0390, DNA repair protein, SNF2 family ), RVT_N (pfam13655), RVT-GII
GIIM (pfam08388), HTH_Tnp_4 (pfam13613), Relaxase (pfam03432), group_II_RT_mat (TIGR04416), ParB_N_like_MT (cd16844), YhdJ (COG0863), Cof (COG0561), PRK10416 (signal recognition particle-docking protein FtsY; Provisional), YcgQ (COG3689), YraQ (COG0701)
lipoyltrans (TIGR00545), COG3442 (Glutamine amidotransferase related to the GATase domain of CobQ ), MurE (COG0769)