myRT

myRT report for GCA_900459155.1_42685_D01

Download annotations/find similar RTs

Seq: UHEW01000005.1 Streptococcus agalactiae strain NCTC9828 genome assembly, contig: ERS956180SCcontig000005, whole genome shotgun sequence (2126429 bp)
Overview 1 RT 1: 840638-843975 bp 2 RT 2: 1029644-1037381 bp 3 RT 3: 1044265-1054392 bp 4 RT 4: 1306314-1311178 bp 5 RT 5: 1476096-1483013 bp 6 RT 6: 1652403-1656626 bp 7 RT 7: 1670160-1675089 bp 8 RT 8: 1713625-1724510 bp 9 RT 9: 1819659-1826181 bp Neighborhood of RT #1 [840638, 843986] RVT-GII GIIM GlnQ Neighborhood of RT #2 [1029644, 1037419] PrgI TraC-F-type RVT_N RVT-GII GIIM TraC-F-type Peptidase_M23 Phage_lysozyme2 PRK08581 Neighborhood of RT #3 [1044265, 1054392] N6_Mtase COG4646 KOG0390 RVT_N RVT-GII GIIM Neighborhood of RT #4 [1306314, 1311183] MdlB RVT-GII GIIM InsE PHA02517 Neighborhood of RT #5 [1476096, 1483033] MurE COG3442 RVT-GII GIIM lipoyltrans PRK11856 lipoamide_DH Neighborhood of RT #6 [1652403, 1656631] YraQ YcgQ RVT-GII GIIM InsE PHA02517 Neighborhood of RT #7 [1670160, 1675175] HisM HisM RVT-GII GIIM PepSY PepSY DUF3114 Neighborhood of RT #8 [1713625, 1724510] M13 Peptidase_M13_N RVT-GII GIIM strep_RK_lipo Inhibitor_I9 Peptidases_S8_C5a_Peptidase fn3_5 PTZ00121 Neighborhood of RT #9 [1819659, 1826183] PRK05764 PRK07246 RVT-GII GIIM PRK08643 Feature: gene Location: 840638-840796 bp Feature: gene Location: 840889-841239 bp Feature: gene Location: 841419-842696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 841623-842238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 841 623-842238 bp Feature: domain Description: GIIM Note: maturase Location: 842292-842508 bp Feature: domain Description: GIIM Note: maturase Location: 842292-842508 bp Feature: gene Location: 843061-843228 bp Feature: gene Location: 843246-843986 bp Feature: domain Description: GlnQ Location: 843264-843975 bp Feature: domain Description: GlnQ Location: 843264-843975 bp Feature: gene Location: 1029644-1029997 bp Feature: domain Description: PrgI Location: 1029656-1029929 bp Feature: domain Description: PrgI Location: 1 029656-1 029929 bp Feature: gene Location: 1029954-1031447 bp Feature: domain Description: TraC-F-type Location: 1030353-1031136 bp Feature: domain Description: TraC-F-type Location: 1 030353-1 031 1 36 bp Feature: gene Location: 1031943-1033649 bp Feature: RT Description: RVT_N Location: 1032048-1032288 bp Feature: RT Description: RVT_N Location: 1 032048-1 032288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1032336-1032996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 032336-1 032996 bp Feature: domain Description: GIIM Note: maturase Location: 1033065-1033284 bp Feature: domain Description: GIIM Note: maturase Location: 1 033065-1 033284 bp Feature: gene Location: 1033582-1034616 bp Feature: domain Description: TraC-F-type Location: 1033747-1034443 bp Feature: domain Description: TraC-F-type Location: 1 033747-1 034443 bp Feature: gene Location: 1034618-1037419 bp Feature: domain Description: Peptidase_M23 Location: 1036061-1036274 bp Feature: domain Description: Peptidase_M23 Location: 1 036061 -1 036274 bp Feature: domain Description: Phage_lysozyme2 Location: 1036415-1036928 bp Feature: domain Description: Phage_lysozyme2 Location: 1 03641 5-1 036928 bp Feature: domain Description: PRK08581 Location: 1037045-1037381 bp Feature: domain Description: PRK08581 Location: 1 037045-1 037381 bp Feature: gene Location: 1044265-1044816 bp Feature: gene Location: 1044865-1050861 bp Feature: domain Description: N6_Mtase Location: 1046878-1047469 bp Feature: domain Description: N6_Mtase Location: 1 046878-1 047469 bp Feature: domain Description: COG4646 Location: 1048060-1050364 bp Feature: domain Description: COG4646 Location: 1 048060-1 050364 bp Feature: domain Description: KOG0390 Location: 1050634-1050832 bp Feature: domain Description: KOG0390 Location: 1 050634-1 050832 bp Feature: gene Location: 1051421-1053079 bp Feature: RT Description: RVT_N Location: 1051466-1051709 bp Feature: RT Description: RVT_N Location: 1 051 466-1 051 709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1051754-1052402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 051 754-1 052402 bp Feature: domain Description: GIIM Note: maturase Location: 1052459-1052687 bp Feature: domain Description: GIIM Note: maturase Location: 1 052459-1 052687 bp Feature: gene Location: 1053213-1054022 bp Feature: gene Location: 1054093-1054392 bp Feature: gene Location: 1306314-1308047 bp Feature: domain Description: MdlB Location: 1306350-1308042 bp Feature: domain Description: MdlB Location: 1 306350-1 308042 bp Feature: gene Location: 1308061-1308258 bp Feature: gene Location: 1308349-1309626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1308553-1309168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 308553-1 3091 68 bp Feature: domain Description: GIIM Note: maturase Location: 1309222-1309438 bp Feature: domain Description: GIIM Note: maturase Location: 1 309222-1 309438 bp Feature: gene Location: 1310039-1310314 bp Feature: domain Description: InsE Location: 1310051-1310300 bp Feature: domain Description: InsE Location: 1 31 0051 -1 31 0300 bp Feature: gene Location: 1310434-1311183 bp Feature: domain Description: PHA02517 Location: 1310446-1311178 bp Feature: domain Description: PHA0251 7 Location: 1 31 0446-1 31 1 1 78 bp Feature: gene Location: 1476096-1477439 bp Feature: domain Description: MurE Location: 1476129-1477434 bp Feature: domain Description: MurE Location: 1 4761 29-1 477434 bp Feature: gene Location: 1477439-1478224 bp Feature: domain Description: COG3442 Location: 1477487-1478213 bp Feature: domain Description: COG3442 Location: 1 477487-1 47821 3 bp Feature: gene Location: 1478290-1479567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1478494-1479109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 478494-1 4791 09 bp Feature: domain Description: GIIM Note: maturase Location: 1479163-1479379 bp Feature: domain Description: GIIM Note: maturase Location: 1 4791 63-1 479379 bp Feature: gene Location: 1480189-1481178 bp Feature: domain Description: lipoyltrans Location: 1480204-1481152 bp Feature: domain Description: lipoyltrans Location: 1 480204-1 481 1 52 bp Feature: gene Location: 1481276-1483033 bp Feature: domain Description: PRK11856 Location: 1481279-1481627 bp Feature: domain Description: PRK1 1 856 Location: 1 481 279-1 481 627 bp Feature: domain Description: lipoamide_DH Location: 1481654-1483013 bp Feature: domain Description: lipoamide_DH Location: 1 481 654-1 48301 3 bp Feature: gene Location: 1652403-1653305 bp Feature: domain Description: YraQ Location: 1652406-1653303 bp Feature: domain Description: YraQ Location: 1 652406-1 653303 bp Feature: gene Location: 1653305-1654117 bp Feature: domain Description: YcgQ Location: 1653308-1654115 bp Feature: domain Description: YcgQ Location: 1 653308-1 6541 1 5 bp Feature: gene Location: 1654183-1655400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1654327-1654942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 654327-1 654942 bp Feature: domain Description: GIIM Note: maturase Location: 1654996-1655212 bp Feature: domain Description: GIIM Note: maturase Location: 1 654996-1 65521 2 bp Feature: gene Location: 1655487-1655762 bp Feature: domain Description: InsE Location: 1655499-1655748 bp Feature: domain Description: InsE Location: 1 655499-1 655748 bp Feature: gene Location: 1655882-1656631 bp Feature: domain Description: PHA02517 Location: 1655894-1656626 bp Feature: domain Description: PHA0251 7 Location: 1 655894-1 656626 bp Feature: gene Location: 1670160-1670855 bp Feature: domain Description: HisM Location: 1670217-1670832 bp Feature: domain Description: HisM Location: 1 67021 7-1 670832 bp Feature: gene Location: 1670867-1671517 bp Feature: domain Description: HisM Location: 1670882-1671506 bp Feature: domain Description: HisM Location: 1 670882-1 671 506 bp Feature: gene Location: 1672036-1673346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1672273-1672888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 672273-1 672888 bp Feature: domain Description: GIIM Note: maturase Location: 1672942-1673158 bp Feature: domain Description: GIIM Note: maturase Location: 1 672942-1 6731 58 bp Feature: gene Location: 1673423-1673989 bp Feature: domain Description: PepSY Location: 1673528-1673699 bp Feature: domain Description: PepSY Location: 1 673528-1 673699 bp Feature: domain Description: PepSY Location: 1673774-1673963 bp Feature: domain Description: PepSY Location: 1 673774-1 673963 bp Feature: gene Location: 1674156-1675175 bp Feature: domain Description: DUF3114 Location: 1674318-1675089 bp Feature: domain Description: DUF31 1 4 Location: 1 67431 8-1 675089 bp Feature: gene Location: 1713625-1714443 bp Feature: domain Description: M13 Location: 1713631-1714330 bp Feature: domain Description: M1 3 Location: 1 71 3631 -1 71 4330 bp Feature: gene Location: 1714464-1715549 bp Feature: domain Description: Peptidase_M13_N Location: 1714602-1715517 bp Feature: domain Description: Peptidase_M1 3_N Location: 1 71 4602-1 71 551 7 bp Feature: gene Location: 1715699-1716976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1715903-1716518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 5903-1 71 651 8 bp Feature: domain Description: GIIM Note: maturase Location: 1716572-1716788 bp Feature: domain Description: GIIM Note: maturase Location: 1 71 6572-1 71 6788 bp Feature: gene Location: 1717590-1724135 bp Feature: domain Description: strep_RK_lipo Location: 1717620-1717725 bp Feature: domain Description: strep_RK_lipo Location: 1 71 7620-1 71 7725 bp Feature: domain Description: Inhibitor_I9 Location: 1718229-1718511 bp Feature: domain Description: Inhibitor_I9 Location: 1 71 8229-1 71 851 1 bp Feature: domain Description: Peptidases_S8_C5a_Peptidase Location: 1718568-1720017 bp Feature: domain Description: Peptidases_S8_C5a_Peptidase Location: 1 71 8568-1 72001 7 bp Feature: domain Description: fn3_5 Location: 1720080-1720404 bp Feature: domain Description: fn3_5 Location: 1 720080-1 720404 bp Feature: domain Description: PTZ00121 Location: 1723725-1723977 bp Feature: domain Description: PTZ001 21 Location: 1 723725-1 723977 bp Feature: gene Location: 1724169-1724510 bp Feature: gene Location: 1819659-1820852 bp Feature: domain Description: PRK05764 Location: 1819665-1820838 bp Feature: domain Description: PRK05764 Location: 1 81 9665-1 820838 bp Feature: gene Location: 1820938-1823403 bp Feature: domain Description: PRK07246 Location: 1820941-1823401 bp Feature: domain Description: PRK07246 Location: 1 820941 -1 823401 bp Feature: gene Location: 1823570-1824847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1823774-1824389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 823774-1 824389 bp Feature: domain Description: GIIM Note: maturase Location: 1824443-1824659 bp Feature: domain Description: GIIM Note: maturase Location: 1 824443-1 824659 bp Feature: gene Location: 1825212-1825385 bp Feature: gene Location: 1825410-1826183 bp Feature: domain Description: PRK08643 Location: 1825422-1826181 bp Feature: domain Description: PRK08643 Location: 1 825422-1 8261 81 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), GlnQ (COG1126), PrgI (pfam12666), TraC-F-type (TIGR02746), RVT_N (pfam13655), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), PRK08581 (amidase domain-containing protein), N6_Mtase (pfam02384)
COG4646 (Adenine-specific DNA methylase, N12 class ), KOG0390 (KOG0390, DNA repair protein, SNF2 family ), MdlB (COG1132), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), MurE (COG0769), COG3442 (Glutamine amidotransferase related to the GATase domain of CobQ ), lipoyltrans (TIGR00545), PRK11856 (branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed), lipoamide_DH (TIGR01350)
YraQ (COG0701), YcgQ (COG3689), HisM (COG0765), PepSY (pfam03413), DUF3114 (pfam11311), M13 (cd08662), Peptidase_M13_N (pfam05649), strep_RK_lipo (TIGR03726), Inhibitor_I9 (pfam05922), Peptidases_S8_C5a_Peptidase (cd07475)
fn3_5 (pfam06280), PTZ00121 (MAEBL; Provisional), PRK05764 (aspartate aminotransferase; Provisional), PRK07246 (bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated), PRK08643 ((S)-acetoin forming diacetyl reductase)

Seq: UHEW01000007.1 Streptococcus agalactiae strain NCTC9828 genome assembly, contig: ERS956180SCcontig000007, whole genome shotgun sequence (13878 bp)
Overview 1 RT 1: 11475-13689 bp Neighborhood of RT #1 [11475, 13877] DUF4956 PolyPPase_VTC_like RVT-GII GIIM Feature: gene Location: 11475-12152 bp Feature: domain Description: DUF4956 Location: 11562-11925 bp Feature: domain Description: DUF4956 Location: 11562 -1192 5 bp Feature: gene Location: 12204-12899 bp Feature: domain Description: PolyPPase_VTC_like Location: 12222-12864 bp Feature: domain Description: PolyPPase_VTC_like Location: 12 2 2 2 -12 864 bp Feature: gene Location: 13266-13877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13269-13419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132 69-13419 bp Feature: domain Description: GIIM Note: maturase Location: 13473-13689 bp Feature: domain Description: GIIM Note: maturase Location: 13473-13689 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4956 (pfam16316), PolyPPase_VTC_like (cd07750), RVT-GII, GIIM (pfam08388)

Seq: UHEW01000009.1 Streptococcus agalactiae strain NCTC9828 genome assembly, contig: ERS956180SCcontig000009, whole genome shotgun sequence (83974 bp)
Overview 1 RT 1: 10819-14565 bp Neighborhood of RT #1 [10819, 14588] DUF2992 RVT-GII GIIM PRK08295 PhoE Feature: gene Location: 10819-11238 bp Feature: domain Description: DUF2992 Location: 10828-11236 bp Feature: domain Description: DUF2992 Location: 10828-1123 6 bp Feature: gene Location: 11537-11698 bp Feature: gene Location: 11769-13079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12006-12621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12006-12621 bp Feature: domain Description: GIIM Note: maturase Location: 12675-12891 bp Feature: domain Description: GIIM Note: maturase Location: 12675-12891 bp Feature: gene Location: 13295-13774 bp Feature: domain Description: PRK08295 Location: 13307-13430 bp Feature: domain Description: PRK08295 Location: 13 3 07-13 43 0 bp Feature: gene Location: 13896-14588 bp Feature: domain Description: PhoE Location: 13905-14565 bp Feature: domain Description: PhoE Location: 13 905-14565 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2992 (pfam11208), RVT-GII, GIIM (pfam08388), PRK08295 (RNA polymerase sporulation sigma factor SigH), PhoE (COG0406)