myRT

myRT report for GCA_900459235.1_42290_C02

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Seq: UHEX01000002.1 Streptococcus agalactiae strain NCTC8100 genome assembly, contig: ERS939215SCcontig000002, whole genome shotgun sequence (2076746 bp)
Overview 1 RT 1: 131411-137939 bp 2 RT 2: 234467-239050 bp 3 RT 3: 359170-365951 bp 4 RT 4: 486446-491078 bp 5 RT 5: 546562-551627 bp 6 RT 6: 702798-709057 bp 7 RT 7: 947275-956800 bp 8 RT 8: 965486-973178 bp 9 RT 9: 1143377-1147876 bp 10 RT 10: 1221209-1227922 bp 11 RT 11: 1271707-1280248 bp 12 RT 12: 1439193-1446746 bp 13 RT 13: 1753101-1757576 bp 14 RT 14: 1908615-1913133 bp Neighborhood of RT #1 [131411, 137953] PRK08643 RVT-GII GIIM PRK07246 PRK05764 Neighborhood of RT #2 [234467, 239052] PHA02517 InsE RVT-GII GIIM M13 PepO Neighborhood of RT #3 [359170, 365953] PRK10416 COG3666 DDE_Tnp_1_6 RVT-GII GIIM YcgQ YraQ Neighborhood of RT #4 [486446, 491086] PHA02517 InsE RVT-GII GIIM EcfA2 EcfA2 EcfT Neighborhood of RT #5 [546562, 551632] lipoyltrans RVT-GII GIIM COG3442 MurE Neighborhood of RT #6 [702798, 709062] COG4684 PGM2 RVT-GII GIIM MdlB Neighborhood of RT #7 [947275, 956800] RVT_N RVT-GII GIIM N6_Mtase COG4646 KOG0390 Neighborhood of RT #8 [965486, 973261] Peptidase_M23 Phage_lysozyme2 PRK08581 TraC-F-type RVT_N RVT-GII GIIM TraC-F-type PrgI Neighborhood of RT #9 [1143377, 1148016] GlnQ RVT-GII GIIM COG3666 DDE_Tnp_1_6 Neighborhood of RT #10 [1221209, 1227927] DUF4956 PolyPPase_VTC_like RVT-GII GIIM Branch_AA_trans PRK12267 Neighborhood of RT #11 [1271707, 1280250] MurC RVT-GII GIIM HepA Der Neighborhood of RT #12 [1439193, 1446751] Pgk lipo_e_P4 RVT-GII GIIM GapA PRK12739 Neighborhood of RT #13 [1753101, 1757576] RVT_N RVT-GII GIIM Neighborhood of RT #14 [1908615, 1913156] NTP_transf_6 DUF2992 RVT-GII GIIM PRK08295 PhoE Feature: gene Location: 131411-132202 bp Feature: domain Description: PRK08643 Location: 131441-132200 bp Feature: domain Description: PRK08643 Location: 1 31 441 -1 32200 bp Feature: gene Location: 132227-132400 bp Feature: gene Location: 132732-134042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132969-133584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 32969-1 33584 bp Feature: domain Description: GIIM Note: maturase Location: 133638-133854 bp Feature: domain Description: GIIM Note: maturase Location: 1 33638-1 33854 bp Feature: gene Location: 134209-136674 bp Feature: domain Description: PRK07246 Location: 134212-136672 bp Feature: domain Description: PRK07246 Location: 1 3421 2-1 36672 bp Feature: gene Location: 136760-137953 bp Feature: domain Description: PRK05764 Location: 136766-137939 bp Feature: domain Description: PRK05764 Location: 1 36766-1 37939 bp Feature: gene Location: 234467-235216 bp Feature: domain Description: PHA02517 Location: 234479-235211 bp Feature: domain Description: PHA0251 7 Location: 234479-23521 1 bp Feature: gene Location: 235336-235611 bp Feature: domain Description: InsE Location: 235348-235597 bp Feature: domain Description: InsE Location: 235348-235597 bp Feature: gene Location: 235629-236870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 235797-236412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 235797-23641 2 bp Feature: domain Description: GIIM Note: maturase Location: 236466-236682 bp Feature: domain Description: GIIM Note: maturase Location: 236466-236682 bp Feature: gene Location: 237020-237697 bp Feature: domain Description: M13 Location: 237152-237632 bp Feature: domain Description: M1 3 Location: 2371 52-237632 bp Feature: gene Location: 237646-239052 bp Feature: domain Description: PepO Location: 237655-239050 bp Feature: domain Description: PepO Location: 237655-239050 bp Feature: gene Location: 359170-360780 bp Feature: domain Description: PRK10416 Location: 359509-360769 bp Feature: domain Description: PRK1 041 6 Location: 359509-360769 bp Feature: gene Location: 360909-362366 bp Feature: domain Description: COG3666 Location: 360921-361398 bp Feature: domain Description: COG3666 Location: 360921 -361 398 bp Feature: domain Description: DDE_Tnp_1_6 Location: 361872-362226 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 361 872-362226 bp Feature: gene Location: 362863-364173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 363100-363715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3631 00-36371 5 bp Feature: domain Description: GIIM Note: maturase Location: 363769-363985 bp Feature: domain Description: GIIM Note: maturase Location: 363769-363985 bp Feature: gene Location: 364239-365051 bp Feature: domain Description: YcgQ Location: 364242-365049 bp Feature: domain Description: YcgQ Location: 364242-365049 bp Feature: gene Location: 365051-365953 bp Feature: domain Description: YraQ Location: 365054-365951 bp Feature: domain Description: YraQ Location: 365054-365951 bp Feature: gene Location: 486446-487195 bp Feature: domain Description: PHA02517 Location: 486458-487190 bp Feature: domain Description: PHA0251 7 Location: 486458-4871 90 bp Feature: gene Location: 487315-487590 bp Feature: domain Description: InsE Location: 487327-487576 bp Feature: domain Description: InsE Location: 487327-487576 bp Feature: gene Location: 487671-488948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 487875-488490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 487875-488490 bp Feature: domain Description: GIIM Note: maturase Location: 488544-488760 bp Feature: domain Description: GIIM Note: maturase Location: 488544-488760 bp Feature: gene Location: 489144-490430 bp Feature: domain Description: EcfA2 Location: 489147-489756 bp Feature: domain Description: EcfA2 Location: 4891 47-489756 bp Feature: domain Description: EcfA2 Location: 489846-490413 bp Feature: domain Description: EcfA2 Location: 489846-49041 3 bp Feature: gene Location: 490514-491086 bp Feature: domain Description: EcfT Location: 490520-491078 bp Feature: domain Description: EcfT Location: 490520-491 078 bp Feature: gene Location: 546562-547551 bp Feature: domain Description: lipoyltrans Location: 546577-547525 bp Feature: domain Description: lipoyltrans Location: 546577-547525 bp Feature: gene Location: 547599-547808 bp Feature: gene Location: 548128-549438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 548365-548980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 548365-548980 bp Feature: domain Description: GIIM Note: maturase Location: 549034-549250 bp Feature: domain Description: GIIM Note: maturase Location: 549034-549250 bp Feature: gene Location: 549504-550175 bp Feature: domain Description: COG3442 Location: 549507-550164 bp Feature: domain Description: COG3442 Location: 549507-5501 64 bp Feature: gene Location: 550289-551632 bp Feature: domain Description: MurE Location: 550322-551627 bp Feature: domain Description: MurE Location: 550322-551 627 bp Feature: gene Location: 702798-703370 bp Feature: domain Description: COG4684 Location: 702801-703365 bp Feature: domain Description: COG4684 Location: 702801 -703365 bp Feature: gene Location: 703480-705198 bp Feature: domain Description: PGM2 Location: 703597-705172 bp Feature: domain Description: PGM2 Location: 703597-7051 72 bp Feature: gene Location: 705717-707027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 705954-706569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 705954-706569 bp Feature: domain Description: GIIM Note: maturase Location: 706623-706839 bp Feature: domain Description: GIIM Note: maturase Location: 706623-706839 bp Feature: gene Location: 707118-707315 bp Feature: gene Location: 707329-709062 bp Feature: domain Description: MdlB Location: 707365-709057 bp Feature: domain Description: MdlB Location: 707365-709057 bp Feature: gene Location: 947275-947574 bp Feature: gene Location: 947644-948453 bp Feature: gene Location: 948587-950245 bp Feature: RT Description: RVT_N Location: 948632-948875 bp Feature: RT Description: RVT_N Location: 948632-948875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948920-949568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948920-949568 bp Feature: domain Description: GIIM Note: maturase Location: 949625-949853 bp Feature: domain Description: GIIM Note: maturase Location: 949625-949853 bp Feature: gene Location: 950805-955313 bp Feature: domain Description: N6_Mtase Location: 951327-951918 bp Feature: domain Description: N6_Mtase Location: 951 327-951 91 8 bp Feature: domain Description: COG4646 Location: 952509-954816 bp Feature: domain Description: COG4646 Location: 952509-95481 6 bp Feature: domain Description: KOG0390 Location: 955083-955284 bp Feature: domain Description: KOG0390 Location: 955083-955284 bp Feature: gene Location: 955346-956800 bp Feature: gene Location: 965486-968290 bp Feature: domain Description: Peptidase_M23 Location: 966932-967142 bp Feature: domain Description: Peptidase_M23 Location: 966932-9671 42 bp Feature: domain Description: Phage_lysozyme2 Location: 967289-967799 bp Feature: domain Description: Phage_lysozyme2 Location: 967289-967799 bp Feature: domain Description: PRK08581 Location: 967916-968252 bp Feature: domain Description: PRK08581 Location: 96791 6-968252 bp Feature: gene Location: 968287-969327 bp Feature: domain Description: TraC-F-type Location: 968452-969148 bp Feature: domain Description: TraC-F-type Location: 968452-9691 48 bp Feature: gene Location: 969260-970957 bp Feature: RT Description: RVT_N Location: 969356-969596 bp Feature: RT Description: RVT_N Location: 969356-969596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 969644-970304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 969644-970304 bp Feature: domain Description: GIIM Note: maturase Location: 970373-970592 bp Feature: domain Description: GIIM Note: maturase Location: 970373-970592 bp Feature: gene Location: 971467-972951 bp Feature: domain Description: TraC-F-type Location: 971785-972640 bp Feature: domain Description: TraC-F-type Location: 971 785-972640 bp Feature: gene Location: 972908-973261 bp Feature: domain Description: PrgI Location: 972920-973178 bp Feature: domain Description: PrgI Location: 972920-9731 78 bp Feature: gene Location: 1143377-1144117 bp Feature: domain Description: GlnQ Location: 1143395-1144106 bp Feature: domain Description: GlnQ Location: 1 1 43395-1 1 441 06 bp Feature: gene Location: 1144135-1144302 bp Feature: gene Location: 1144634-1145944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1144871-1145486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 44871 -1 1 45486 bp Feature: domain Description: GIIM Note: maturase Location: 1145540-1145756 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 45540-1 1 45756 bp Feature: gene Location: 1146124-1146474 bp Feature: gene Location: 1146559-1148016 bp Feature: domain Description: COG3666 Location: 1146571-1147048 bp Feature: domain Description: COG3666 Location: 1 1 46571 -1 1 47048 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1147522-1147876 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 1 1 47522-1 1 47876 bp Feature: gene Location: 1221209-1221886 bp Feature: domain Description: DUF4956 Location: 1221296-1221659 bp Feature: domain Description: DUF4956 Location: 1 221 296-1 221 659 bp Feature: gene Location: 1221938-1222549 bp Feature: domain Description: PolyPPase_VTC_like Location: 1221941-1222514 bp Feature: domain Description: PolyPPase_VTC_like Location: 1 221 941 -1 22251 4 bp Feature: gene Location: 1222999-1224276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1223203-1223818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 223203-1 22381 8 bp Feature: domain Description: GIIM Note: maturase Location: 1223872-1224088 bp Feature: domain Description: GIIM Note: maturase Location: 1 223872-1 224088 bp Feature: gene Location: 1224380-1225684 bp Feature: domain Description: Branch_AA_trans Location: 1224389-1225571 bp Feature: domain Description: Branch_AA_trans Location: 1 224389-1 225571 bp Feature: gene Location: 1225879-1227927 bp Feature: domain Description: PRK12267 Location: 1225939-1227922 bp Feature: domain Description: PRK1 2267 Location: 1 225939-1 227922 bp Feature: gene Location: 1271707-1273038 bp Feature: domain Description: MurC Location: 1271716-1273012 bp Feature: domain Description: MurC Location: 1 271 71 6-1 27301 2 bp Feature: gene Location: 1273048-1273665 bp Feature: gene Location: 1273837-1275114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274041-1274656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 274041 -1 274656 bp Feature: domain Description: GIIM Note: maturase Location: 1274710-1274926 bp Feature: domain Description: GIIM Note: maturase Location: 1 27471 0-1 274926 bp Feature: gene Location: 1275687-1278785 bp Feature: domain Description: HepA Location: 1277244-1278777 bp Feature: domain Description: HepA Location: 1 277244-1 278777 bp Feature: gene Location: 1278940-1280250 bp Feature: domain Description: Der Location: 1278943-1280248 bp Feature: domain Description: Der Location: 1 278943-1 280248 bp Feature: gene Location: 1439193-1440389 bp Feature: domain Description: Pgk Location: 1439199-1440384 bp Feature: domain Description: Pgk Location: 1 4391 99-1 440384 bp Feature: gene Location: 1440524-1441393 bp Feature: domain Description: lipo_e_P4 Location: 1440527-1441388 bp Feature: domain Description: lipo_e_P4 Location: 1 440527-1 441 388 bp Feature: gene Location: 1441617-1442894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1441821-1442436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 441 821 -1 442436 bp Feature: domain Description: GIIM Note: maturase Location: 1442490-1442706 bp Feature: domain Description: GIIM Note: maturase Location: 1 442490-1 442706 bp Feature: gene Location: 1443459-1444469 bp Feature: domain Description: GapA Location: 1443468-1444461 bp Feature: domain Description: GapA Location: 1 443468-1 444461 bp Feature: gene Location: 1444673-1446751 bp Feature: domain Description: PRK12739 Location: 1444682-1446746 bp Feature: domain Description: PRK1 2739 Location: 1 444682-1 446746 bp Feature: gene Location: 1753101-1753373 bp Feature: gene Location: 1753704-1754066 bp Feature: gene Location: 1754366-1756024 bp Feature: RT Description: RVT_N Location: 1754411-1754654 bp Feature: RT Description: RVT_N Location: 1 75441 1 -1 754654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1754699-1755347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 754699-1 755347 bp Feature: domain Description: GIIM Note: maturase Location: 1755404-1755632 bp Feature: domain Description: GIIM Note: maturase Location: 1 755404-1 755632 bp Feature: gene Location: 1756726-1757058 bp Feature: gene Location: 1757313-1757576 bp Feature: gene Location: 1908615-1909166 bp Feature: domain Description: NTP_transf_6 Location: 1908675-1909155 bp Feature: domain Description: NTP_transf_6 Location: 1 908675-1 9091 55 bp Feature: gene Location: 1909386-1909805 bp Feature: domain Description: DUF2992 Location: 1909395-1909803 bp Feature: domain Description: DUF2992 Location: 1 909395-1 909803 bp Feature: gene Location: 1910336-1911646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1910573-1911188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 0573-1 91 1 1 88 bp Feature: domain Description: GIIM Note: maturase Location: 1911242-1911458 bp Feature: domain Description: GIIM Note: maturase Location: 1 91 1 242-1 91 1 458 bp Feature: gene Location: 1911862-1912341 bp Feature: domain Description: PRK08295 Location: 1911874-1912102 bp Feature: domain Description: PRK08295 Location: 1 91 1 874-1 91 21 02 bp Feature: gene Location: 1912464-1913156 bp Feature: domain Description: PhoE Location: 1912473-1913133 bp Feature: domain Description: PhoE Location: 1 91 2473-1 91 31 33 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08643 ((S)-acetoin forming diacetyl reductase), RVT-GII, GIIM (pfam08388), PRK07246 (bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated), PRK05764 (aspartate aminotransferase; Provisional), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), M13 (cd08662), PepO (COG3590), PRK10416 (signal recognition particle-docking protein FtsY; Provisional)
COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), YcgQ (COG3689), YraQ (COG0701), EcfA2 (COG1122), EcfT (COG0619), lipoyltrans (TIGR00545), COG3442 (Glutamine amidotransferase related to the GATase domain of CobQ ), MurE (COG0769), COG4684 (Uncharacterized membrane protein )
PGM2 (cd05799), MdlB (COG1132), RVT_N (pfam13655), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG0390 (KOG0390, DNA repair protein, SNF2 family ), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), PRK08581 (amidase domain-containing protein), TraC-F-type (TIGR02746)
PrgI (pfam12666), GlnQ (COG1126), DUF4956 (pfam16316), PolyPPase_VTC_like (cd07750), Branch_AA_trans (pfam05525), PRK12267 (methionyl-tRNA synthetase; Reviewed), MurC (COG0773), HepA (COG0553), Der (COG1160), Pgk (COG0126)
lipo_e_P4 (TIGR01533), GapA (COG0057), PRK12739 (elongation factor G; Reviewed), NTP_transf_6 (pfam06042), DUF2992 (pfam11208), PRK08295 (RNA polymerase sporulation sigma factor SigH), PhoE (COG0406)