myRT

myRT report for GCA_900459245.1_41825_C01

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Seq: UHET01000003.1 Streptococcus agalactiae strain NCTC8188 genome assembly, contig: ERS879564SCcontig000003, whole genome shotgun sequence (2204509 bp)
Overview 1 RT 1: 104869-108665 bp 2 RT 2: 489672-497404 bp 3 RT 3: 512536-522663 bp 4 RT 4: 665519-672047 bp 5 RT 5: 1227917-1232994 bp 6 RT 6: 1398875-1404855 bp 7 RT 7: 1537496-1544268 bp 8 RT 8: 1616145-1623853 bp 9 RT 9: 1656923-1665465 bp 10 RT 10: 2066198-2074285 bp Neighborhood of RT #1 [104869, 108688] InsE RVT-GII GIIM PRK08295 PhoE Neighborhood of RT #2 [489672, 497445] PrgI TraC-F-type RVT_N RVT-GII GIIM TraC-F-type Peptidase_M23 Phage_lysozyme2 PRK08581 Neighborhood of RT #3 [512536, 522663] N6_Mtase COG4646 KOG0390 RVT_N RVT-GII GIIM Neighborhood of RT #4 [665519, 672061] PRK08643 RVT-GII GIIM PRK07246 PRK05764 Neighborhood of RT #5 [1227917, 1232999] lipoyltrans RVT-GII GIIM COG3442 MurE Neighborhood of RT #6 [1398875, 1404860] PHA02517 InsE RVT-GII PHA02517 InsE RVT-GII GIIM MdlB Neighborhood of RT #7 [1537496, 1544279] YraQ YcgQ RVT-GII GIIM COG3666 DDE_Tnp_1_6 PRK10416 Neighborhood of RT #8 [1616145, 1623921] Peptidase_M23 Phage_lysozyme2 PRK08581 TraC-F-type RVT_N RVT-GII GIIM TraC-F-type PrgI Neighborhood of RT #9 [1656923, 1665467] MurC RVT-GII GIIM HepA Der Neighborhood of RT #10 [2066198, 2074356] BaeS RVT-GII GIIM PLN02563 MFS_MucK Feature: gene Location: 104869-105144 bp Feature: domain Description: InsE Location: 104881-105130 bp Feature: domain Description: InsE Location: 1 04881 -1 051 30 bp Feature: gene Location: 105171-105371 bp Feature: gene Location: 105868-107178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106105-106720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 061 05-1 06720 bp Feature: domain Description: GIIM Note: maturase Location: 106774-106990 bp Feature: domain Description: GIIM Note: maturase Location: 1 06774-1 06990 bp Feature: gene Location: 107394-107873 bp Feature: domain Description: PRK08295 Location: 107406-107634 bp Feature: domain Description: PRK08295 Location: 1 07406-1 07634 bp Feature: gene Location: 107996-108688 bp Feature: domain Description: PhoE Location: 108005-108665 bp Feature: domain Description: PhoE Location: 1 08005-1 08665 bp Feature: gene Location: 489672-490025 bp Feature: domain Description: PrgI Location: 489684-489939 bp Feature: domain Description: PrgI Location: 489684-489939 bp Feature: gene Location: 489982-491469 bp Feature: domain Description: TraC-F-type Location: 490765-491155 bp Feature: domain Description: TraC-F-type Location: 490765-491 1 55 bp Feature: gene Location: 491965-493671 bp Feature: RT Description: RVT_N Location: 492070-492310 bp Feature: RT Description: RVT_N Location: 492070-49231 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 492358-493018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 492358-49301 8 bp Feature: domain Description: GIIM Note: maturase Location: 493087-493306 bp Feature: domain Description: GIIM Note: maturase Location: 493087-493306 bp Feature: gene Location: 493604-494644 bp Feature: domain Description: TraC-F-type Location: 493769-494465 bp Feature: domain Description: TraC-F-type Location: 493769-494465 bp Feature: gene Location: 494641-497445 bp Feature: domain Description: Peptidase_M23 Location: 496087-496291 bp Feature: domain Description: Peptidase_M23 Location: 496087-496291 bp Feature: domain Description: Phage_lysozyme2 Location: 496444-496954 bp Feature: domain Description: Phage_lysozyme2 Location: 496444-496954 bp Feature: domain Description: PRK08581 Location: 497071-497404 bp Feature: domain Description: PRK08581 Location: 497071 -497404 bp Feature: gene Location: 512536-513087 bp Feature: gene Location: 513137-519133 bp Feature: domain Description: N6_Mtase Location: 515147-515738 bp Feature: domain Description: N6_Mtase Location: 51 51 47-51 5738 bp Feature: domain Description: COG4646 Location: 516329-518636 bp Feature: domain Description: COG4646 Location: 51 6329-51 8636 bp Feature: domain Description: KOG0390 Location: 518903-519104 bp Feature: domain Description: KOG0390 Location: 51 8903-51 91 04 bp Feature: gene Location: 519501-521351 bp Feature: RT Description: RVT_N Location: 519738-519981 bp Feature: RT Description: RVT_N Location: 51 9738-51 9981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 520026-520674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 520026-520674 bp Feature: domain Description: GIIM Note: maturase Location: 520731-520959 bp Feature: domain Description: GIIM Note: maturase Location: 520731 -520959 bp Feature: gene Location: 521485-522294 bp Feature: gene Location: 522364-522663 bp Feature: gene Location: 665519-666310 bp Feature: domain Description: PRK08643 Location: 665549-666308 bp Feature: domain Description: PRK08643 Location: 665549-666308 bp Feature: gene Location: 666335-666508 bp Feature: gene Location: 666840-668150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 667077-667692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 667077-667692 bp Feature: domain Description: GIIM Note: maturase Location: 667746-667962 bp Feature: domain Description: GIIM Note: maturase Location: 667746-667962 bp Feature: gene Location: 668317-670782 bp Feature: domain Description: PRK07246 Location: 668320-670780 bp Feature: domain Description: PRK07246 Location: 668320-670780 bp Feature: gene Location: 670868-672061 bp Feature: domain Description: PRK05764 Location: 670874-672047 bp Feature: domain Description: PRK05764 Location: 670874-672047 bp Feature: gene Location: 1227917-1228906 bp Feature: domain Description: lipoyltrans Location: 1227932-1228880 bp Feature: domain Description: lipoyltrans Location: 1 227932-1 228880 bp Feature: gene Location: 1228954-1229163 bp Feature: gene Location: 1229495-1230805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1229732-1230347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 229732-1 230347 bp Feature: domain Description: GIIM Note: maturase Location: 1230401-1230617 bp Feature: domain Description: GIIM Note: maturase Location: 1 230401 -1 23061 7 bp Feature: gene Location: 1230871-1231542 bp Feature: domain Description: COG3442 Location: 1230874-1231531 bp Feature: domain Description: COG3442 Location: 1 230874-1 231 531 bp Feature: gene Location: 1231656-1232999 bp Feature: domain Description: MurE Location: 1231689-1232994 bp Feature: domain Description: MurE Location: 1 231 689-1 232994 bp Feature: gene Location: 1398875-1399624 bp Feature: domain Description: PHA02517 Location: 1398887-1399619 bp Feature: domain Description: PHA0251 7 Location: 1 398887-1 39961 9 bp Feature: gene Location: 1399744-1400019 bp Feature: domain Description: InsE Location: 1399756-1400005 bp Feature: domain Description: InsE Location: 1 399756-1 400005 bp Feature: gene Location: 1400253-1401014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1400490-1400997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 400490-1 400997 bp Feature: gene Location: 1401028-1401777 bp Feature: domain Description: PHA02517 Location: 1401040-1401772 bp Feature: domain Description: PHA0251 7 Location: 1 401 040-1 401 772 bp Feature: gene Location: 1401897-1402172 bp Feature: domain Description: InsE Location: 1401909-1402158 bp Feature: domain Description: InsE Location: 1 401 909-1 4021 58 bp Feature: gene Location: 1402190-1402825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1402253-1402367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 402253-1 402367 bp Feature: domain Description: GIIM Note: maturase Location: 1402421-1402637 bp Feature: domain Description: GIIM Note: maturase Location: 1 402421 -1 402637 bp Feature: gene Location: 1402916-1403113 bp Feature: gene Location: 1403127-1404860 bp Feature: domain Description: MdlB Location: 1403163-1404855 bp Feature: domain Description: MdlB Location: 1 4031 63-1 404855 bp Feature: gene Location: 1537496-1538398 bp Feature: domain Description: YraQ Location: 1537499-1538396 bp Feature: domain Description: YraQ Location: 1 537499-1 538396 bp Feature: gene Location: 1538398-1539210 bp Feature: domain Description: YcgQ Location: 1538401-1539208 bp Feature: domain Description: YcgQ Location: 1 538401 -1 539208 bp Feature: gene Location: 1539276-1540553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1539480-1540095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 539480-1 540095 bp Feature: domain Description: GIIM Note: maturase Location: 1540149-1540365 bp Feature: domain Description: GIIM Note: maturase Location: 1 5401 49-1 540365 bp Feature: gene Location: 1541083-1542540 bp Feature: domain Description: COG3666 Location: 1541095-1541572 bp Feature: domain Description: COG3666 Location: 1 541 095-1 541 572 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1542046-1542400 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 1 542046-1 542400 bp Feature: gene Location: 1542669-1544279 bp Feature: domain Description: PRK10416 Location: 1542945-1544268 bp Feature: domain Description: PRK1 041 6 Location: 1 542945-1 544268 bp Feature: gene Location: 1616145-1618946 bp Feature: domain Description: Peptidase_M23 Location: 1617588-1617801 bp Feature: domain Description: Peptidase_M23 Location: 1 61 7588-1 61 7801 bp Feature: domain Description: Phage_lysozyme2 Location: 1617942-1618455 bp Feature: domain Description: Phage_lysozyme2 Location: 1 61 7942-1 61 8455 bp Feature: domain Description: PRK08581 Location: 1618572-1618908 bp Feature: domain Description: PRK08581 Location: 1 61 8572-1 61 8908 bp Feature: gene Location: 1618948-1619982 bp Feature: domain Description: TraC-F-type Location: 1619113-1619809 bp Feature: domain Description: TraC-F-type Location: 1 61 91 1 3-1 61 9809 bp Feature: gene Location: 1619915-1621612 bp Feature: RT Description: RVT_N Location: 1620011-1620251 bp Feature: RT Description: RVT_N Location: 1 62001 1 -1 620251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1620299-1620959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 620299-1 620959 bp Feature: domain Description: GIIM Note: maturase Location: 1621028-1621247 bp Feature: domain Description: GIIM Note: maturase Location: 1 621 028-1 621 247 bp Feature: gene Location: 1622118-1623611 bp Feature: domain Description: TraC-F-type Location: 1622895-1623297 bp Feature: domain Description: TraC-F-type Location: 1 622895-1 623297 bp Feature: gene Location: 1623568-1623921 bp Feature: domain Description: PrgI Location: 1623580-1623853 bp Feature: domain Description: PrgI Location: 1 623580-1 623853 bp Feature: gene Location: 1656923-1658254 bp Feature: domain Description: MurC Location: 1656932-1658228 bp Feature: domain Description: MurC Location: 1 656932-1 658228 bp Feature: gene Location: 1658264-1658881 bp Feature: gene Location: 1659053-1660330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1659257-1659872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 659257-1 659872 bp Feature: domain Description: GIIM Note: maturase Location: 1659926-1660142 bp Feature: domain Description: GIIM Note: maturase Location: 1 659926-1 6601 42 bp Feature: gene Location: 1660903-1664001 bp Feature: domain Description: HepA Location: 1662301-1663993 bp Feature: domain Description: HepA Location: 1 662301 -1 663993 bp Feature: gene Location: 1664157-1665467 bp Feature: domain Description: Der Location: 1664160-1665465 bp Feature: domain Description: Der Location: 1 6641 60-1 665465 bp Feature: gene Location: 2066198-2067586 bp Feature: domain Description: BaeS Location: 2066732-2067569 bp Feature: domain Description: BaeS Location: 2066732-2067569 bp Feature: gene Location: 2067679-2068287 bp Feature: gene Location: 2068365-2069642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2068569-2069184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2068569-20691 84 bp Feature: domain Description: GIIM Note: maturase Location: 2069238-2069454 bp Feature: domain Description: GIIM Note: maturase Location: 2069238-2069454 bp Feature: gene Location: 2070231-2072732 bp Feature: domain Description: PLN02563 Location: 2070240-2072730 bp Feature: domain Description: PLN02563 Location: 2070240-2072730 bp Feature: gene Location: 2073109-2074356 bp Feature: domain Description: MFS_MucK Location: 2073154-2074285 bp Feature: domain Description: MFS_MucK Location: 20731 54-2074285 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PRK08295 (RNA polymerase sporulation sigma factor SigH), PhoE (COG0406), PrgI (pfam12666), TraC-F-type (TIGR02746), RVT_N (pfam13655), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013)
PRK08581 (amidase domain-containing protein), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG0390 (KOG0390, DNA repair protein, SNF2 family ), PRK08643 ((S)-acetoin forming diacetyl reductase), PRK07246 (bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated), PRK05764 (aspartate aminotransferase; Provisional), lipoyltrans (TIGR00545), COG3442 (Glutamine amidotransferase related to the GATase domain of CobQ ), MurE (COG0769)
PHA02517 (putative transposase OrfB; Reviewed), MdlB (COG1132), YraQ (COG0701), YcgQ (COG3689), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), PRK10416 (signal recognition particle-docking protein FtsY; Provisional), MurC (COG0773), HepA (COG0553), Der (COG1160)
BaeS (COG0642), PLN02563 (aminoacyl-tRNA ligase), MFS_MucK (cd17371)