myRT

myRT report for GCA_900460185.1_41906_F01

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Seq: UHHT01000001.1 Streptococcus equi subsp. zooepidemicus strain NCTC7023 genome assembly, contig: ERS879590SCcontig000001, whole genome shotgun sequence (2185283 bp)
Overview 1 RT 1: 1173712-1181444 bp 2 RT 2: 1189959-1200253 bp 3 RT 3: 1210358-1216050 bp 4 RT 4: 2043729-2048642 bp Neighborhood of RT #1 [1173712, 1181485] PrgI VirB4_CagE RVT_N RVT-GII GIIM TraC-F-type Peptidase_M23 Phage_lysozyme2 PRK08581 Neighborhood of RT #2 [1189959, 1200253] N6_Mtase COG4646 RVT-GII Intron_maturas2 KOG1000 Neighborhood of RT #3 [1210358, 1216235] MobC Relaxase RVT-GII Intron_maturas2 VirD2 Streptin-Immun SR_ResInv Neighborhood of RT #4 [2043729, 2048773] MobC Relaxase RVT-GII Intron_maturas2 Relaxase DUF4435 Feature: gene Location: 1173712-1174065 bp Feature: domain Description: PrgI Location: 1173724-1173982 bp Feature: domain Description: PrgI Location: 1 1 73724-1 1 73982 bp Feature: gene Location: 1174022-1175509 bp Feature: domain Description: VirB4_CagE Location: 1174598-1175237 bp Feature: domain Description: VirB4_CagE Location: 1 1 74598-1 1 75237 bp Feature: gene Location: 1176014-1177711 bp Feature: RT Description: RVT_N Location: 1176110-1176350 bp Feature: RT Description: RVT_N Location: 1 1 761 1 0-1 1 76350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1176398-1177058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 76398-1 1 77058 bp Feature: domain Description: GIIM Note: maturase Location: 1177127-1177346 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 771 27-1 1 77346 bp Feature: gene Location: 1177716-1178684 bp Feature: domain Description: TraC-F-type Location: 1177809-1178505 bp Feature: domain Description: TraC-F-type Location: 1 1 77809-1 1 78505 bp Feature: gene Location: 1178681-1181485 bp Feature: domain Description: Peptidase_M23 Location: 1180127-1180331 bp Feature: domain Description: Peptidase_M23 Location: 1 1 801 27-1 1 80331 bp Feature: domain Description: Phage_lysozyme2 Location: 1180484-1180994 bp Feature: domain Description: Phage_lysozyme2 Location: 1 1 80484-1 1 80994 bp Feature: domain Description: PRK08581 Location: 1181111-1181444 bp Feature: domain Description: PRK08581 Location: 1 1 81 1 1 1 -1 1 81 444 bp Feature: gene Location: 1189959-1190510 bp Feature: gene Location: 1190560-1196457 bp Feature: domain Description: N6_Mtase Location: 1192564-1193164 bp Feature: domain Description: N6_Mtase Location: 1 1 92564-1 1 931 64 bp Feature: domain Description: COG4646 Location: 1193746-1196053 bp Feature: domain Description: COG4646 Location: 1 1 93746-1 1 96053 bp Feature: gene Location: 1197021-1198832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1197285-1198107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 97285-1 1 981 07 bp Feature: domain Description: Intron_maturas2 Location: 1198176-1198653 bp Feature: domain Description: Intron_maturas2 Location: 1 1 981 76-1 1 98653 bp Feature: gene Location: 1198865-1199884 bp Feature: domain Description: KOG1000 Location: 1198940-1199135 bp Feature: domain Description: KOG1 000 Location: 1 1 98940-1 1 991 35 bp Feature: gene Location: 1199954-1200253 bp Feature: gene Location: 1210358-1210723 bp Feature: domain Description: MobC Location: 1210544-1210670 bp Feature: domain Description: MobC Location: 1 21 0544-1 21 0670 bp Feature: gene Location: 1210710-1211138 bp Feature: domain Description: Relaxase Location: 1210743-1211103 bp Feature: domain Description: Relaxase Location: 1 21 0743-1 21 1 1 03 bp Feature: gene Location: 1211675-1213477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1211951-1212755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 1 951 -1 21 2755 bp Feature: domain Description: Intron_maturas2 Location: 1212839-1213142 bp Feature: domain Description: Intron_maturas2 Location: 1 21 2839-1 21 31 42 bp Feature: gene Location: 1213658-1215070 bp Feature: domain Description: VirD2 Location: 1213664-1214294 bp Feature: domain Description: VirD2 Location: 1 21 3664-1 21 4294 bp Feature: domain Description: Streptin-Immun Location: 1214753-1215029 bp Feature: domain Description: Streptin-Immun Location: 1 21 4753-1 21 5029 bp Feature: gene Location: 1215555-1216235 bp Feature: domain Description: SR_ResInv Location: 1215642-1216050 bp Feature: domain Description: SR_ResInv Location: 1 21 5642-1 21 6050 bp Feature: gene Location: 2043729-2043980 bp Feature: domain Description: MobC Location: 2043828-2043942 bp Feature: domain Description: MobC Location: 2043828-2043942 bp Feature: gene Location: 2043986-2044348 bp Feature: domain Description: Relaxase Location: 2044016-2044313 bp Feature: domain Description: Relaxase Location: 204401 6-204431 3 bp Feature: gene Location: 2044885-2046687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2045161-2045965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20451 61 -2045965 bp Feature: domain Description: Intron_maturas2 Location: 2046049-2046352 bp Feature: domain Description: Intron_maturas2 Location: 2046049-2046352 bp Feature: gene Location: 2046832-2047812 bp Feature: domain Description: Relaxase Location: 2046841-2047228 bp Feature: domain Description: Relaxase Location: 2046841 -2047228 bp Feature: gene Location: 2047823-2048773 bp Feature: domain Description: DUF4435 Location: 2047964-2048642 bp Feature: domain Description: DUF4435 Location: 2047964-2048642 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrgI (pfam12666), VirB4_CagE (TIGR00929), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraC-F-type (TIGR02746), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), PRK08581 (amidase domain-containing protein), N6_Mtase (pfam02384)
COG4646 (Adenine-specific DNA methylase, N12 class ), Intron_maturas2 (pfam01348), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), MobC (pfam05713), Relaxase (pfam03432), VirD2 (COG3843), Streptin-Immun (pfam11083), SR_ResInv (cd03768), DUF4435 (pfam14491)