myRT

myRT report for GCA_900460255.1_34500_B01

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Seq: UHIE01000002.1 Vibrio cincinnatiensis strain NCTC12012 genome assembly, contig: ERS605485SCcontig000002, whole genome shotgun sequence (1010330 bp)
Overview 1 RT 1: 427805-432939 bp 2 RT 2: 455096-459815 bp 3 RT 3: 465805-471852 bp 4 RT 4: 512134-519556 bp 5 RT 5: 561937-566971 bp Neighborhood of RT #1 [427805, 432944] RplT integrase_gron RVT-GII GIIM YhhI YhhI YhhI ParE Neighborhood of RT #2 [455096, 459952] RelB RVT-GII GIIM YhhI YhhI YhhI HEPN_Cthe2314 Neighborhood of RT #3 [465805, 471857] LbH_XAT RVT-GII GIIM YhhI YhhI YhhI PRK06123 Neighborhood of RT #4 [512134, 519600] Arm-DNA-bind_3 RVT-GII GIIM group_II_RT_mat RVT-GII GIIM YhhI YhhI YhhI INT_Rci_Hp1_C Neighborhood of RT #5 [561937, 566979] HTH_29 HTH_33 DDE_3 VOC_Bs_YwkD_like RVT-GII GIIM YhhI YhhI YhhI protocat_pcaD KOG1454 Feature: gene Location: 427805-428158 bp Feature: domain Description: RplT Location: 427808-428156 bp Feature: domain Description: RplT Location: 427808-4281 56 bp Feature: gene Location: 428205-429179 bp Feature: domain Description: integrase_gron Location: 428232-429177 bp Feature: domain Description: integrase_gron Location: 428232-4291 77 bp Feature: gene Location: 429830-431155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 430109-430766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4301 09-430766 bp Feature: domain Description: GIIM Note: maturase Location: 430847-431063 bp Feature: domain Description: GIIM Note: maturase Location: 430847-431 063 bp Feature: gene Location: 431390-432523 bp Feature: domain Description: YhhI Location: 431426-431756 bp Feature: domain Description: YhhI Location: 431 426-431 756 bp Feature: domain Description: YhhI Location: 431816-432101 bp Feature: domain Description: YhhI Location: 431 81 6-4321 01 bp Feature: domain Description: YhhI Location: 432173-432443 bp Feature: domain Description: YhhI Location: 4321 73-432443 bp Feature: gene Location: 432645-432944 bp Feature: domain Description: ParE Location: 432657-432939 bp Feature: domain Description: ParE Location: 432657-432939 bp Feature: gene Location: 455096-455374 bp Feature: domain Description: RelB Location: 455105-455345 bp Feature: domain Description: RelB Location: 4551 05-455345 bp Feature: gene Location: 455877-456008 bp Feature: gene Location: 456450-457775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 456729-457386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 456729-457386 bp Feature: domain Description: GIIM Note: maturase Location: 457467-457683 bp Feature: domain Description: GIIM Note: maturase Location: 457467-457683 bp Feature: gene Location: 458010-459143 bp Feature: domain Description: YhhI Location: 458046-458376 bp Feature: domain Description: YhhI Location: 458046-458376 bp Feature: domain Description: YhhI Location: 458436-458721 bp Feature: domain Description: YhhI Location: 458436-458721 bp Feature: domain Description: YhhI Location: 458793-459063 bp Feature: domain Description: YhhI Location: 458793-459063 bp Feature: gene Location: 459185-459952 bp Feature: domain Description: HEPN_Cthe2314 Location: 459518-459815 bp Feature: domain Description: HEPN_Cthe231 4 Location: 45951 8-45981 5 bp Feature: gene Location: 465805-466467 bp Feature: domain Description: LbH_XAT Location: 465916-466390 bp Feature: domain Description: LbH_XAT Location: 46591 6-466390 bp Feature: gene Location: 467686-467859 bp Feature: gene Location: 468320-469645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 468599-469256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 468599-469256 bp Feature: domain Description: GIIM Note: maturase Location: 469337-469553 bp Feature: domain Description: GIIM Note: maturase Location: 469337-469553 bp Feature: gene Location: 469880-471013 bp Feature: domain Description: YhhI Location: 469916-470246 bp Feature: domain Description: YhhI Location: 46991 6-470246 bp Feature: domain Description: YhhI Location: 470306-470591 bp Feature: domain Description: YhhI Location: 470306-470591 bp Feature: domain Description: YhhI Location: 470663-470933 bp Feature: domain Description: YhhI Location: 470663-470933 bp Feature: gene Location: 471105-471857 bp Feature: domain Description: PRK06123 Location: 471117-471852 bp Feature: domain Description: PRK061 23 Location: 471 1 1 7-471 852 bp Feature: gene Location: 512134-512943 bp Feature: gene Location: 513132-513644 bp Feature: domain Description: Arm-DNA-bind_3 Location: 513240-513492 bp Feature: domain Description: Arm-DNA-bind_3 Location: 51 3240-51 3492 bp Feature: gene Location: 514086-515411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 514365-515022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 4365-51 5022 bp Feature: domain Description: GIIM Note: maturase Location: 515103-515319 bp Feature: domain Description: GIIM Note: maturase Location: 51 51 03-51 531 9 bp Feature: gene Location: 515716-515910 bp Feature: gene Location: 516059-516406 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 516173-516350 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 51 61 73-51 6350 bp Feature: gene Location: 516364-517386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 516367-516997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 6367-51 6997 bp Feature: domain Description: GIIM Note: maturase Location: 517078-517294 bp Feature: domain Description: GIIM Note: maturase Location: 51 7078-51 7294 bp Feature: gene Location: 517620-518759 bp Feature: domain Description: YhhI Location: 517650-517986 bp Feature: domain Description: YhhI Location: 51 7650-51 7986 bp Feature: domain Description: YhhI Location: 518043-518334 bp Feature: domain Description: YhhI Location: 51 8043-51 8334 bp Feature: domain Description: YhhI Location: 518397-518673 bp Feature: domain Description: YhhI Location: 51 8397-51 8673 bp Feature: gene Location: 518767-519600 bp Feature: domain Description: INT_Rci_Hp1_C Location: 519025-519556 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 51 9025-51 9556 bp Feature: gene Location: 561937-562977 bp Feature: domain Description: HTH_29 Location: 562033-562198 bp Feature: domain Description: HTH_29 Location: 562033-5621 98 bp Feature: domain Description: HTH_33 Location: 562237-562405 bp Feature: domain Description: HTH_33 Location: 562237-562405 bp Feature: domain Description: DDE_3 Location: 562438-562867 bp Feature: domain Description: DDE_3 Location: 562438-562867 bp Feature: gene Location: 562990-563271 bp Feature: domain Description: VOC_Bs_YwkD_like Location: 563011-563266 bp Feature: domain Description: VOC_Bs_YwkD_like Location: 56301 1 -563266 bp Feature: gene Location: 563795-565120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 564074-564731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 564074-564731 bp Feature: domain Description: GIIM Note: maturase Location: 564812-565028 bp Feature: domain Description: GIIM Note: maturase Location: 56481 2-565028 bp Feature: gene Location: 565355-566488 bp Feature: domain Description: YhhI Location: 565391-565721 bp Feature: domain Description: YhhI Location: 565391 -565721 bp Feature: domain Description: YhhI Location: 565781-566066 bp Feature: domain Description: YhhI Location: 565781 -566066 bp Feature: domain Description: YhhI Location: 566138-566408 bp Feature: domain Description: YhhI Location: 5661 38-566408 bp Feature: gene Location: 566488-566979 bp Feature: domain Description: protocat_pcaD Location: 566509-566590 bp Feature: domain Description: protocat_pcaD Location: 566509-566590 bp Feature: domain Description: KOG1454 Location: 566761-566971 bp Feature: domain Description: KOG1 454 Location: 566761 -566971 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RplT (COG0292), integrase_gron (TIGR02249), RVT-GII, GIIM (pfam08388), YhhI (COG5433), ParE (COG3668), RelB (pfam04221), HEPN_Cthe2314 (pfam18730), LbH_XAT (cd03349), PRK06123 (SDR family oxidoreductase)
Arm-DNA-bind_3 (pfam13356), group_II_RT_mat (TIGR04416), INT_Rci_Hp1_C (cd00796), HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), VOC_Bs_YwkD_like (cd08352), protocat_pcaD (TIGR02427), KOG1454 (KOG1454, Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) )

Seq: UHIE01000001.1 Vibrio cincinnatiensis strain NCTC12012 genome assembly, contig: ERS605485SCcontig000001, whole genome shotgun sequence (17667 bp)
Overview 1 RT 1: 6598-11324 bp Neighborhood of RT #1 [6598, 11326] ParE YhhI YhhI YhhI RVT-GII GIIM RVT-GII RVT-GII RelB YafQ Feature: gene Location: 6598-6897 bp Feature: domain Description: ParE Location: 6610-6892 bp Feature: domain Description: ParE Location: 6610-6892 bp Feature: gene Location: 7019-8152 bp Feature: domain Description: YhhI Location: 7055-7385 bp Feature: domain Description: YhhI Location: 7055-7385 bp Feature: domain Description: YhhI Location: 7445-7730 bp Feature: domain Description: YhhI Location: 7445-7730 bp Feature: domain Description: YhhI Location: 7802-8072 bp Feature: domain Description: YhhI Location: 7802 -8072 bp Feature: gene Location: 8387-9094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8417-8705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8417-8705 bp Feature: domain Description: GIIM Note: maturase Location: 8786-9002 bp Feature: domain Description: GIIM Note: maturase Location: 8786-9002 bp Feature: gene Location: 9119-9337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9122-9314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 912 2 -9314 bp Feature: gene Location: 9345-9710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9624-9702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 962 4-9702 bp Feature: gene Location: 10786-11064 bp Feature: domain Description: RelB Location: 10795-11035 bp Feature: domain Description: RelB Location: 10795-11035 bp Feature: gene Location: 11114-11326 bp Feature: domain Description: YafQ Location: 11129-11324 bp Feature: domain Description: YafQ Location: 1112 9-1132 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParE (COG3668), YhhI (COG5433), RVT-GII, GIIM (pfam08388), RelB (pfam04221), YafQ (COG3041)