myRT

myRT report for GCA_900460295.1_51108_A01

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Seq: UHIH01000003.1 Vibrio metschnikovii strain NCTC8443 genome assembly, contig: ERS1353906SCcontig000003, whole genome shotgun sequence (114453 bp)
Overview 1 RT 1: 59441-62420 bp 2 RT 2: 80729-85241 bp Neighborhood of RT #1 [59441, 62434] InsE RVT-GII GIIM TnpB_IS66 Neighborhood of RT #2 [80729, 85246] COG3547 RVT_N RVT-GII GIIM INT_RitA_C_like Feature: gene Location: 59441-59662 bp Feature: domain Description: InsE Location: 59453-59651 bp Feature: domain Description: InsE Location: 59453-59651 bp Feature: gene Location: 59679-59888 bp Feature: gene Location: 60202-61512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60418-61033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6041 8-61 033 bp Feature: domain Description: GIIM Note: maturase Location: 61081-61285 bp Feature: domain Description: GIIM Note: maturase Location: 61 081 -61 285 bp Feature: gene Location: 61672-61992 bp Feature: gene Location: 62108-62434 bp Feature: domain Description: TnpB_IS66 Location: 62135-62420 bp Feature: domain Description: TnpB_IS66 Location: 621 35-62420 bp Feature: gene Location: 80729-81772 bp Feature: domain Description: COG3547 Location: 80792-81740 bp Feature: domain Description: COG3547 Location: 80792-81 740 bp Feature: gene Location: 82086-82361 bp Feature: gene Location: 82435-83907 bp Feature: RT Description: RVT_N Location: 82483-82723 bp Feature: RT Description: RVT_N Location: 82483-82723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82771-83398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82771 -83398 bp Feature: domain Description: GIIM Note: maturase Location: 83455-83683 bp Feature: domain Description: GIIM Note: maturase Location: 83455-83683 bp Feature: gene Location: 84247-84501 bp Feature: gene Location: 84743-85246 bp Feature: domain Description: INT_RitA_C_like Location: 84788-85241 bp Feature: domain Description: INT_RitA_C_like Location: 84788-85241 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), TnpB_IS66 (pfam05717), COG3547 (Transposase ), RVT_N (pfam13655), INT_RitA_C_like (cd01188)

Seq: UHIH01000002.1 Vibrio metschnikovii strain NCTC8443 genome assembly, contig: ERS1353906SCcontig000002, whole genome shotgun sequence (887149 bp)
Overview 1 RT 1: 410993-416869 bp 2 RT 2: 481288-485228 bp Neighborhood of RT #1 [410993, 416874] COG3333 RVT-GII GIIM CitA CitB Neighborhood of RT #2 [481288, 485287] OmpR DUF3404 BaeS RVT-GII GIIM DUF3404 Feature: gene Location: 410993-412495 bp Feature: domain Description: COG3333 Location: 411002-412478 bp Feature: domain Description: COG3333 Location: 411002 -412 478 bp Feature: gene Location: 412573-412782 bp Feature: gene Location: 413088-414398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413304-413919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413304-413919 bp Feature: domain Description: GIIM Note: maturase Location: 413967-414171 bp Feature: domain Description: GIIM Note: maturase Location: 413967-414171 bp Feature: gene Location: 414512-416167 bp Feature: domain Description: CitA Location: 414578-416153 bp Feature: domain Description: CitA Location: 414578-416153 bp Feature: gene Location: 416188-416874 bp Feature: domain Description: CitB Location: 416200-416869 bp Feature: domain Description: CitB Location: 4162 00-416869 bp Feature: gene Location: 481288-481947 bp Feature: domain Description: OmpR Location: 481300-481942 bp Feature: domain Description: OmpR Location: 481300-481942 bp Feature: gene Location: 481922-482635 bp Feature: domain Description: DUF3404 Location: 481925-482006 bp Feature: domain Description: DUF3404 Location: 48192 5-482 006 bp Feature: domain Description: BaeS Location: 482006-482618 bp Feature: domain Description: BaeS Location: 482 006-482 618 bp Feature: gene Location: 482756-484066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 482972-483587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 482 972 -483587 bp Feature: domain Description: GIIM Note: maturase Location: 483635-483839 bp Feature: domain Description: GIIM Note: maturase Location: 483635-483839 bp Feature: gene Location: 484372-484515 bp Feature: gene Location: 484541-485287 bp Feature: domain Description: DUF3404 Location: 484616-485228 bp Feature: domain Description: DUF3404 Location: 484616-4852 2 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3333 (TctA family transporter ), RVT-GII, GIIM (pfam08388), CitA (COG3290), CitB (TIGR02484), OmpR (COG0745), DUF3404 (pfam11884), BaeS (COG0642)

Seq: UHIH01000001.1 Vibrio metschnikovii strain NCTC8443 genome assembly, contig: ERS1353906SCcontig000001, whole genome shotgun sequence (2829732 bp)
Overview 1 RT 1: 102514-106263 bp 2 RT 2: 643400-649974 bp 3 RT 3: 1321935-1326935 bp 4 RT 4: 1920373-1926385 bp 5 RT 5: 2557093-2561495 bp 6 RT 6: 2723896-2730060 bp Neighborhood of RT #1 [102514, 106265] rpmG RVT-GII GIIM PRK01103 Neighborhood of RT #2 [643400, 649976] COG4590 RVT-GII GIIM PstA PRK14236 Neighborhood of RT #3 [1321935, 1326935] RhtB RVT-GII GIIM AlsT Neighborhood of RT #4 [1920373, 1926390] Cache_2 Tar PRK15048 PRK07726 RVT-GII GIIM PRK10824 Neighborhood of RT #5 [2557093, 2561495] EFP_modif_epmB SapB RVT_N RVT-GII GIIM HNHc Neighborhood of RT #6 [2723896, 2730062] DDE_Tnp_1_5 RVT-GII GIIM PRK05755 Feature: gene Location: 102514-102681 bp Feature: domain Description: rpmG Location: 102517-102673 bp Feature: domain Description: rpmG Location: 102517-102673 bp Feature: gene Location: 102773-102982 bp Feature: gene Location: 103288-104598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103504-104119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103 504-104119 bp Feature: domain Description: GIIM Note: maturase Location: 104167-104371 bp Feature: domain Description: GIIM Note: maturase Location: 104167-1043 71 bp Feature: gene Location: 104932-105423 bp Feature: gene Location: 105456-106265 bp Feature: domain Description: PRK01103 Location: 105459-106263 bp Feature: domain Description: PRK01103 Location: 105459-106263 bp Feature: gene Location: 643400-645601 bp Feature: domain Description: COG4590 Location: 643415-645599 bp Feature: domain Description: COG4590 Location: 643 415-645599 bp Feature: gene Location: 645718-645927 bp Feature: gene Location: 646233-647543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 646449-647064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 646449-647064 bp Feature: domain Description: GIIM Note: maturase Location: 647112-647316 bp Feature: domain Description: GIIM Note: maturase Location: 647112-6473 16 bp Feature: gene Location: 647515-649155 bp Feature: domain Description: PstA Location: 648301-649135 bp Feature: domain Description: PstA Location: 6483 01-64913 5 bp Feature: gene Location: 649158-649976 bp Feature: domain Description: PRK14236 Location: 649191-649974 bp Feature: domain Description: PRK1423 6 Location: 649191-649974 bp Feature: gene Location: 1321935-1322570 bp Feature: domain Description: RhtB Location: 1321938-1322559 bp Feature: domain Description: RhtB Location: 13 2193 8-13 22559 bp Feature: gene Location: 1322652-1322861 bp Feature: gene Location: 1323167-1324477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1323383-1323998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 23 3 83 -13 23 998 bp Feature: domain Description: GIIM Note: maturase Location: 1324046-1324250 bp Feature: domain Description: GIIM Note: maturase Location: 13 24046-13 24250 bp Feature: gene Location: 1324665-1326038 bp Feature: domain Description: AlsT Location: 1324671-1326000 bp Feature: domain Description: AlsT Location: 13 24671-13 26000 bp Feature: gene Location: 1326714-1326935 bp Feature: gene Location: 1920373-1921890 bp Feature: domain Description: Cache_2 Location: 1920499-1920748 bp Feature: domain Description: Cache_2 Location: 1920499-1920748 bp Feature: domain Description: Tar Location: 1920898-1921357 bp Feature: domain Description: Tar Location: 1920898-19213 57 bp Feature: domain Description: PRK15048 Location: 1921378-1921882 bp Feature: domain Description: PRK15048 Location: 19213 78-1921882 bp Feature: gene Location: 1922114-1924072 bp Feature: domain Description: PRK07726 Location: 1922123-1924034 bp Feature: domain Description: PRK07726 Location: 1922123 -192403 4 bp Feature: gene Location: 1924125-1925435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1924341-1924956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19243 41-1924956 bp Feature: domain Description: GIIM Note: maturase Location: 1925004-1925208 bp Feature: domain Description: GIIM Note: maturase Location: 1925004-1925208 bp Feature: gene Location: 1925749-1925958 bp Feature: gene Location: 1926055-1926390 bp Feature: domain Description: PRK10824 Location: 1926061-1926385 bp Feature: domain Description: PRK10824 Location: 1926061-19263 85 bp Feature: gene Location: 2557093-2558115 bp Feature: domain Description: EFP_modif_epmB Location: 2557141-2558098 bp Feature: domain Description: EFP_modif_epmB Location: 2557141-2558098 bp Feature: gene Location: 2558296-2558766 bp Feature: domain Description: SapB Location: 2558350-2558737 bp Feature: domain Description: SapB Location: 25583 50-255873 7 bp Feature: gene Location: 2558983-2560722 bp Feature: RT Description: RVT_N Location: 2559100-2559343 bp Feature: RT Description: RVT_N Location: 2559100-25593 43 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2559388-2560033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25593 88-256003 3 bp Feature: domain Description: GIIM Note: maturase Location: 2560087-2560318 bp Feature: domain Description: GIIM Note: maturase Location: 2560087-25603 18 bp Feature: domain Description: HNHc Note: nucleases Location: 2560546-2560696 bp Feature: domain Description: HNHc Note: nucleases Location: 2560546-2560696 bp Feature: gene Location: 2560748-2560876 bp Feature: gene Location: 2561301-2561495 bp Feature: gene Location: 2723896-2724036 bp Feature: gene Location: 2724189-2725109 bp Feature: domain Description: DDE_Tnp_1_5 Location: 2724246-2724576 bp Feature: domain Description: DDE_Tnp_1_5 Location: 2724246-2724576 bp Feature: gene Location: 2725351-2726661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2725567-2726182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2725567-2726182 bp Feature: domain Description: GIIM Note: maturase Location: 2726230-2726434 bp Feature: domain Description: GIIM Note: maturase Location: 272623 0-272643 4 bp Feature: gene Location: 2726967-2727176 bp Feature: gene Location: 2727267-2730062 bp Feature: domain Description: PRK05755 Location: 2727288-2730060 bp Feature: domain Description: PRK05755 Location: 2727288-273 0060 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpmG (PRK00595), RVT-GII, GIIM (pfam08388), PRK01103 (bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase), COG4590 (ABC-type uncharacterized transport system, permease component ), PstA (COG0581), PRK14236 (phosphate transporter ATP-binding protein; Provisional), RhtB (COG1280), AlsT (COG1115), Cache_2 (smart01049)
Tar (COG0840), PRK15048 (methyl-accepting chemotaxis protein II; Provisional), PRK07726 (DNA topoisomerase 3), PRK10824 (Grx4 family monothiol glutaredoxin), EFP_modif_epmB (TIGR03821), SapB (smart00741), RVT_N (pfam13655), HNHc (smart00507), DDE_Tnp_1_5 (pfam13737), PRK05755 (DNA polymerase I; Provisional)