myRT

myRT report for GCA_900460325.1_53421_H01

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Seq: UHIJ01000001.1 Vibrio alginolyticus strain NCTC10675 genome assembly, contig: ERS1545382SCcontig000001, whole genome shotgun sequence (3520295 bp)
Overview 1 RT 1: 375777-386114 bp 2 RT 2: 696331-699699 bp 3 RT 3: 1523186-1528086 bp 4 RT 4: 3098015-3105772 bp Neighborhood of RT #1 [375777, 386116] RMtype1_S_FclI-TRD1-CR1_like RMtype1_S_FclI-TRD1-CR1_like DUF4145 HsdR RVT-UG1 gldA Neighborhood of RT #2 [696331, 699830] HATPase RVT-UG28 COG5340 Neighborhood of RT #3 [1523186, 1528127] Hypoth_Ymh AAA_15 AAA_15 RVT-Retrons PRK09726 Neighborhood of RT #4 [3098015, 3105780] PRK11059 RVT-GII Intron_maturas2 HNHc PRK09010 PRK10100 Feature: gene Location: 375777-376952 bp Ori: SUP14270.1 Feature: domain Description: RMtype1_S_FclI-TRD1-CR1_like Location: 375798-376311 bp Feature: domain Description: RMtype1 _S_FclI-TRD1 -CR1 _like Location: 375798-37631 1 bp Feature: domain Description: RMtype1_S_FclI-TRD1-CR1_like Location: 376419-376929 bp Feature: domain Description: RMtype1 _S_FclI-TRD1 -CR1 _like Location: 37641 9-376929 bp Feature: gene Location: 376987-380604 bp Ori: SUP14275.1 Feature: domain Description: DUF4145 Location: 377116-377395 bp Feature: domain Description: DUF41 45 Location: 3771 1 6-377395 bp Feature: domain Description: HsdR Location: 377701-380527 bp Feature: domain Description: HsdR Location: 377701 -380527 bp Feature: gene Location: 380621-384361 bp Ori: SUP14279.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 381248-381779 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 381 248-381 779 bp Feature: gene Location: 384370-384801 bp Feature: gene Location: 385034-386116 bp Ori: SUP14288.1 Gene: dhaD Feature: domain Description: gldA Location: 385037-386114 bp Feature: domain Description: gldA Location: 385037-3861 1 4 bp Feature: gene Location: 696331-697356 bp Ori: SUP15363.1 Feature: domain Description: HATPase Location: 696796-697198 bp Feature: domain Description: HATPase Location: 696796-6971 98 bp Feature: gene Location: 697668-699170 bp Ori: SUP15368.1 Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 697956-698595 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 697956-698595 bp Feature: gene Location: 699200-699298 bp Feature: gene Location: 699303-699830 bp Ori: SUP15375.1 Feature: domain Description: COG5340 Location: 699423-699699 bp Feature: domain Description: COG5340 Location: 699423-699699 bp Feature: gene Location: 1523186-1523962 bp Ori: SUP17954.1 Feature: domain Description: Hypoth_Ymh Location: 1523606-1523957 bp Feature: domain Description: Hypoth_Ymh Location: 1 523606-1 523957 bp Feature: gene Location: 1524138-1526255 bp Ori: SUP17957.1 Feature: domain Description: AAA_15 Location: 1524141-1524558 bp Feature: domain Description: AAA_1 5 Location: 1 5241 41 -1 524558 bp Feature: domain Description: AAA_15 Location: 1524693-1525122 bp Feature: domain Description: AAA_1 5 Location: 1 524693-1 5251 22 bp Feature: gene Location: 1526431-1527531 bp Ori: SUP17960.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1526572-1527130 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 526572-1 5271 30 bp Feature: gene Location: 1527760-1527876 bp Feature: gene Location: 1527870-1528127 bp Ori: SUP17965.1 Gene: hipB Feature: domain Description: PRK09726 Location: 1527879-1528086 bp Feature: domain Description: PRK09726 Location: 1 527879-1 528086 bp Feature: gene Location: 3098015-3099460 bp Feature: gene Location: 3099472-3101481 bp Ori: SUP22855.1 Gene: csrD Feature: domain Description: PRK11059 Location: 3099484-3101395 bp Feature: domain Description: PRK1 1 059 Location: 3099484-31 01 395 bp Feature: gene Location: 3101811-3103697 bp Ori: SUP22860.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3102099-3102936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 02099-31 02936 bp Feature: domain Description: Intron_maturas2 Location: 3103041-3103443 bp Feature: domain Description: Intron_maturas2 Location: 31 03041 -31 03443 bp Feature: domain Description: HNHc Note: nucleases Location: 3103476-3103647 bp Feature: domain Description: HNHc Note: nucleases Location: 31 03476-31 03647 bp Feature: gene Location: 3104319-3104858 bp Ori: SUP22863.1 Gene: ssb Feature: domain Description: PRK09010 Location: 3104322-3104856 bp Feature: domain Description: PRK0901 0 Location: 31 04322-31 04856 bp Feature: gene Location: 3105136-3105780 bp Ori: SUP22867.1 Gene: csgD_2 Feature: domain Description: PRK10100 Location: 3105286-3105772 bp Feature: domain Description: PRK1 01 00 Location: 31 05286-31 05772 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RMtype1_S_FclI-TRD1-CR1_like (cd17254), DUF4145 (pfam13643), HsdR (COG4096), RVT-UG1, gldA (PRK09423), HATPase (cl00075), RVT-UG28, COG5340 (Transcriptional regulator, predicted component of viral defense system ), Hypoth_Ymh (pfam09509), AAA_15 (pfam13175)
RVT-Retrons, PRK09726 (type II toxin-antitoxin system antitoxin HipB), PRK11059 (regulatory protein CsrD; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK09010 (single-stranded DNA-binding protein; Provisional), PRK10100 (transcriptional regulator CsgD)

Seq: UHIJ01000002.1 Vibrio alginolyticus strain NCTC10675 genome assembly, contig: ERS1545382SCcontig000002, whole genome shotgun sequence (1806644 bp)
Overview 1 RT 1: 145215-153312 bp Neighborhood of RT #1 [145215, 153312] AcrB RVT-GII GIIM Feature: gene Location: 145215-148373 bp Ori: SUQ35758.1 Gene: czcA_2 Feature: domain Description: AcrB Location: 145242-148269 bp Feature: domain Description: AcrB Location: 1452 42 -1482 69 bp Feature: gene Location: 148698-148964 bp Feature: gene Location: 149890-151104 bp Ori: SUQ35760.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150034-150655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150034-150655 bp Feature: domain Description: GIIM Note: maturase Location: 150706-150925 bp Feature: domain Description: GIIM Note: maturase Location: 150706-15092 5 bp Feature: gene Location: 151454-152302 bp Feature: gene Location: 152473-153312 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AcrB (COG0841), RVT-GII, GIIM (pfam08388)