myRT

myRT report for GCA_900460335.1_52121_G01

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Seq: UHHZ01000001.1 Tissierella praeacuta strain NCTC11158 genome assembly, contig: ERS1353912SCcontig000001, whole genome shotgun sequence (3195344 bp)
Overview 1 RT 1: 72214-78089 bp 2 RT 2: 262483-265832 bp 3 RT 3: 678717-683719 bp 4 RT 4: 907519-914715 bp 5 RT 5: 1152673-1157417 bp 6 RT 6: 1782054-1788349 bp 7 RT 7: 2028547-2036340 bp 8 RT 8: 2284122-2290018 bp 9 RT 9: 2755058-2762224 bp 10 RT 10: 3154358-3158861 bp Neighborhood of RT #1 [72214, 78202] NhaC PRK10860 RVT-GII GIIM YejR HTH_ARSR Neighborhood of RT #2 [262483, 265852] ComFB GlrX_YruB RVT-GII GIIM prismane_assoc Phage_holin_4_2 Neighborhood of RT #3 [678717, 683739] YufQ cyt_deam_tetra RVT-GII GIIM YdiL PadR Neighborhood of RT #4 [907519, 914715] RNase_R smpB RVT-GII GIIM LAGLIDADG_3 Neighborhood of RT #5 [1152673, 1157473] mgsA CspC RVT-GII GIIM SurA NQR2_RnfD_RnfE Neighborhood of RT #6 [1782054, 1788349] AraC RVT-GII GIIM PBP2_NikA Neighborhood of RT #7 [2028547, 2036354] TraC-F-type RVT-GII HNHc VirB4 RVT-GII GIIM DUF3781 Neighborhood of RT #8 [2284122, 2290023] DrsE_2 CoA_CoA_reduc RHOD_Pyr_redox SirA_RHOD_Pry_redox RVT-GII GIIM CotJC AmiC SPOR Neighborhood of RT #9 [2755058, 2762224] N6_N4_Mtase TraC-F-type RVT-GII GIIM HNHc Neighborhood of RT #10 [3154358, 3158863] Polbeta SPOUT_MTase RVT-GII GIIM PRK13933 Feature: gene Location: 72214-73578 bp Feature: domain Description: NhaC Location: 72247-73507 bp Feature: domain Description: NhaC Location: 72247-73507 bp Feature: gene Location: 73955-74407 bp Feature: domain Description: PRK10860 Location: 73967-74402 bp Feature: domain Description: PRK1 0860 Location: 73967-74402 bp Feature: gene Location: 75246-76670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75609-76227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75609-76227 bp Feature: domain Description: GIIM Note: maturase Location: 76281-76503 bp Feature: domain Description: GIIM Note: maturase Location: 76281 -76503 bp Feature: gene Location: 76906-77838 bp Feature: domain Description: YejR Location: 76924-77704 bp Feature: domain Description: YejR Location: 76924-77704 bp Feature: gene Location: 77855-78202 bp Feature: domain Description: HTH_ARSR Location: 77879-78089 bp Feature: domain Description: HTH_ARSR Location: 77879-78089 bp Feature: gene Location: 262483-262758 bp Feature: domain Description: ComFB Location: 262501-262729 bp Feature: domain Description: ComFB Location: 262501 -262729 bp Feature: gene Location: 262957-263187 bp Feature: domain Description: GlrX_YruB Location: 262969-263179 bp Feature: domain Description: GlrX_YruB Location: 262969-2631 79 bp Feature: gene Location: 263618-265042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263981-264599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263981 -264599 bp Feature: domain Description: GIIM Note: maturase Location: 264653-264875 bp Feature: domain Description: GIIM Note: maturase Location: 264653-264875 bp Feature: gene Location: 265127-265312 bp Feature: domain Description: prismane_assoc Location: 265136-265307 bp Feature: domain Description: prismane_assoc Location: 2651 36-265307 bp Feature: gene Location: 265439-265852 bp Feature: domain Description: Phage_holin_4_2 Location: 265538-265832 bp Feature: domain Description: Phage_holin_4_2 Location: 265538-265832 bp Feature: gene Location: 678717-679628 bp Feature: domain Description: YufQ Location: 678732-679623 bp Feature: domain Description: YufQ Location: 678732-679623 bp Feature: gene Location: 679672-680091 bp Feature: domain Description: cyt_deam_tetra Location: 679687-680086 bp Feature: domain Description: cyt_deam_tetra Location: 679687-680086 bp Feature: gene Location: 680547-681971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 680910-681528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68091 0-681 528 bp Feature: domain Description: GIIM Note: maturase Location: 681582-681804 bp Feature: domain Description: GIIM Note: maturase Location: 681 582-681 804 bp Feature: gene Location: 682426-683220 bp Feature: domain Description: YdiL Location: 682453-683092 bp Feature: domain Description: YdiL Location: 682453-683092 bp Feature: gene Location: 683371-683739 bp Feature: domain Description: PadR Location: 683434-683719 bp Feature: domain Description: PadR Location: 683434-68371 9 bp Feature: gene Location: 907519-909630 bp Feature: domain Description: RNase_R Location: 907525-909628 bp Feature: domain Description: RNase_R Location: 907525-909628 bp Feature: gene Location: 909693-910157 bp Feature: domain Description: smpB Location: 909711-910140 bp Feature: domain Description: smpB Location: 90971 1 -91 01 40 bp Feature: gene Location: 911340-912764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911703-912321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 1 703-91 2321 bp Feature: domain Description: GIIM Note: maturase Location: 912375-912597 bp Feature: domain Description: GIIM Note: maturase Location: 91 2375-91 2597 bp Feature: gene Location: 912840-913250 bp Feature: domain Description: LAGLIDADG_3 Location: 912855-913086 bp Feature: domain Description: LAGLIDADG_3 Location: 91 2855-91 3086 bp Feature: gene Location: 913783-914715 bp Feature: gene Location: 1152673-1153119 bp Feature: domain Description: mgsA Location: 1152691-1153102 bp Feature: domain Description: mgsA Location: 1 1 52691 -1 1 531 02 bp Feature: gene Location: 1153361-1153558 bp Feature: domain Description: CspC Location: 1153364-1153553 bp Feature: domain Description: CspC Location: 1 1 53364-1 1 53553 bp Feature: gene Location: 1153999-1155423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1154362-1154980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 54362-1 1 54980 bp Feature: domain Description: GIIM Note: maturase Location: 1155034-1155256 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 55034-1 1 55256 bp Feature: gene Location: 1155589-1156338 bp Feature: domain Description: SurA Location: 1155616-1156315 bp Feature: domain Description: SurA Location: 1 1 5561 6-1 1 5631 5 bp Feature: gene Location: 1156493-1157473 bp Feature: domain Description: NQR2_RnfD_RnfE Location: 1156532-1157417 bp Feature: domain Description: NQR2_RnfD_RnfE Location: 1 1 56532-1 1 5741 7 bp Feature: gene Location: 1782054-1782779 bp Feature: gene Location: 1783605-1784582 bp Feature: domain Description: AraC Location: 1784259-1784562 bp Feature: domain Description: AraC Location: 1 784259-1 784562 bp Feature: gene Location: 1784672-1786096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1785035-1785653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 785035-1 785653 bp Feature: domain Description: GIIM Note: maturase Location: 1785707-1785929 bp Feature: domain Description: GIIM Note: maturase Location: 1 785707-1 785929 bp Feature: gene Location: 1786527-1787123 bp Feature: domain Description: PBP2_NikA Location: 1786539-1787082 bp Feature: domain Description: PBP2_NikA Location: 1 786539-1 787082 bp Feature: gene Location: 1787321-1788349 bp Feature: gene Location: 2028547-2029044 bp Feature: gene Location: 2029044-2030063 bp Feature: domain Description: TraC-F-type Location: 2029515-2029953 bp Feature: domain Description: TraC-F-type Location: 202951 5-2029953 bp Feature: gene Location: 2030124-2031947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2030445-2031132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2030445-2031 1 32 bp Feature: domain Description: HNHc Note: nucleases Location: 2031675-2031813 bp Feature: domain Description: HNHc Note: nucleases Location: 2031 675-2031 81 3 bp Feature: gene Location: 2032670-2033521 bp Feature: domain Description: VirB4 Location: 2032988-2033510 bp Feature: domain Description: VirB4 Location: 2032988-203351 0 bp Feature: gene Location: 2033638-2035062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2034001-2034619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2034001 -203461 9 bp Feature: domain Description: GIIM Note: maturase Location: 2034673-2034895 bp Feature: domain Description: GIIM Note: maturase Location: 2034673-2034895 bp Feature: gene Location: 2035571-2035996 bp Feature: gene Location: 2036088-2036354 bp Feature: domain Description: DUF3781 Location: 2036127-2036340 bp Feature: domain Description: DUF3781 Location: 20361 27-2036340 bp Feature: gene Location: 2284122-2284508 bp Feature: domain Description: DrsE_2 Location: 2284125-2284503 bp Feature: domain Description: DrsE_2 Location: 22841 25-2284503 bp Feature: gene Location: 2284604-2286640 bp Feature: domain Description: CoA_CoA_reduc Location: 2284652-2285942 bp Feature: domain Description: CoA_CoA_reduc Location: 2284652-2285942 bp Feature: domain Description: RHOD_Pyr_redox Location: 2285993-2286251 bp Feature: domain Description: RHOD_Pyr_redox Location: 2285993-2286251 bp Feature: domain Description: SirA_RHOD_Pry_redox Location: 2286404-2286608 bp Feature: domain Description: SirA_RHOD_Pry_redox Location: 2286404-2286608 bp Feature: gene Location: 2286855-2288279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2287218-2287836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228721 8-2287836 bp Feature: domain Description: GIIM Note: maturase Location: 2287890-2288112 bp Feature: domain Description: GIIM Note: maturase Location: 2287890-22881 1 2 bp Feature: gene Location: 2288730-2288906 bp Feature: domain Description: CotJC Location: 2288733-2288898 bp Feature: domain Description: CotJC Location: 2288733-2288898 bp Feature: gene Location: 2289259-2290023 bp Feature: domain Description: AmiC Location: 2289265-2289775 bp Feature: domain Description: AmiC Location: 2289265-2289775 bp Feature: domain Description: SPOR Location: 2289811-2290018 bp Feature: domain Description: SPOR Location: 228981 1 -229001 8 bp Feature: gene Location: 2755058-2756071 bp Feature: domain Description: N6_N4_Mtase Location: 2755163-2756015 bp Feature: domain Description: N6_N4_Mtase Location: 27551 63-275601 5 bp Feature: gene Location: 2756073-2757620 bp Feature: domain Description: TraC-F-type Location: 2756202-2757417 bp Feature: domain Description: TraC-F-type Location: 2756202-275741 7 bp Feature: gene Location: 2757624-2759504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2757951-2758650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2757951 -2758650 bp Feature: domain Description: GIIM Note: maturase Location: 2758719-2758947 bp Feature: domain Description: GIIM Note: maturase Location: 275871 9-2758947 bp Feature: domain Description: HNHc Note: nucleases Location: 2759211-2759379 bp Feature: domain Description: HNHc Note: nucleases Location: 275921 1 -2759379 bp Feature: gene Location: 2760199-2761344 bp Feature: gene Location: 2761724-2762224 bp Feature: gene Location: 3154358-3154813 bp Feature: domain Description: Polbeta Location: 3154421-3154691 bp Feature: domain Description: Polbeta Location: 31 54421 -31 54691 bp Feature: gene Location: 3155078-3155557 bp Feature: domain Description: SPOUT_MTase Location: 3155081-3155552 bp Feature: domain Description: SPOUT_MTase Location: 31 55081 -31 55552 bp Feature: gene Location: 3155869-3157293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3156232-3156850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 56232-31 56850 bp Feature: domain Description: GIIM Note: maturase Location: 3156904-3157126 bp Feature: domain Description: GIIM Note: maturase Location: 31 56904-31 571 26 bp Feature: gene Location: 3157745-3158047 bp Feature: gene Location: 3158114-3158863 bp Feature: domain Description: PRK13933 Location: 3158117-3158861 bp Feature: domain Description: PRK1 3933 Location: 31 581 1 7-31 58861 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NhaC (COG1757), PRK10860 (tRNA-specific adenosine deaminase; Provisional), RVT-GII, GIIM (pfam08388), YejR (COG0523), HTH_ARSR (smart00418), ComFB (pfam10719), GlrX_YruB (TIGR02196), prismane_assoc (TIGR03980), Phage_holin_4_2 (pfam04020)
YufQ (COG1079), cyt_deam_tetra (TIGR01354), YdiL (COG1266), PadR (pfam03551), RNase_R (TIGR02063), smpB (TIGR00086), LAGLIDADG_3 (pfam14528), mgsA (PRK05234), CspC (COG1278), SurA (COG0760)
NQR2_RnfD_RnfE (pfam03116), AraC (COG2207), PBP2_NikA (cd08489), TraC-F-type (TIGR02746), HNHc (smart00507), VirB4 (COG3451), DUF3781 (pfam12636), DrsE_2 (pfam13686), CoA_CoA_reduc (TIGR03385), RHOD_Pyr_redox (cd01524)
SirA_RHOD_Pry_redox (cd03420), CotJC (COG3546), AmiC (COG0860), SPOR (pfam05036), N6_N4_Mtase (pfam01555), Polbeta (pfam18765), SPOUT_MTase (pfam02590), PRK13933 (stationary phase survival protein SurE; Provisional)