myRT

myRT report for GCA_900460535.1_42650_C02

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Seq: UHIL01000002.1 Vibrio parahaemolyticus strain NCTC10903 genome assembly, contig: ERS956171SCcontig000002, whole genome shotgun sequence (1811788 bp)
Overview 1 RT 1: 1572705-1581376 bp 2 RT 2: 1584701-1592675 bp Neighborhood of RT #1 [1572705, 1581376] HTH_Tnp_ISL3 DDE_Tnp_ISL3 HsdR RVT-UG1 Neighborhood of RT #2 [1584701, 1592675] DUF3800 RVT-Retrons AAA_21 Feature: gene Location: 1572705-1573937 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 1572996-1573143 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 1 572996-1 5731 43 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 1573191-1573908 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 1 5731 91 -1 573908 bp Feature: gene Location: 1574064-1577033 bp Feature: domain Description: HsdR Location: 1574121-1576950 bp Feature: domain Description: HsdR Location: 1 5741 21 -1 576950 bp Feature: gene Location: 1577103-1580972 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1577790-1578318 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1 577790-1 57831 8 bp Feature: gene Location: 1581066-1581224 bp Feature: gene Location: 1581227-1581376 bp Feature: gene Location: 1584701-1585768 bp Feature: domain Description: DUF3800 Location: 1584704-1585568 bp Feature: domain Description: DUF3800 Location: 1 584704-1 585568 bp Feature: gene Location: 1585825-1587534 bp Feature: gene Location: 1587590-1588732 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1587818-1588358 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 58781 8-1 588358 bp Feature: gene Location: 1588826-1590934 bp Feature: domain Description: AAA_21 Location: 1588901-1589849 bp Feature: domain Description: AAA_21 Location: 1 588901 -1 589849 bp Feature: gene Location: 1591047-1592675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), HsdR (COG4096), RVT-UG1, DUF3800 (pfam12686), RVT-Retrons, AAA_21 (pfam13304)