myRT

myRT report for GCA_900460565.1_34500_C01

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Seq: UHIW01000001.1 Vibrio vulnificus strain NCTC13647 genome assembly, contig: ERS605486SCcontig000001, whole genome shotgun sequence (3251517 bp)
Overview 1 RT 1: 33922-46239 bp 2 RT 2: 77646-82950 bp 3 RT 3: 107497-112406 bp 4 RT 4: 1734511-1748390 bp 5 RT 5: 3228656-3232928 bp Neighborhood of RT #1 [33922, 46532] RVT-GII GIIM Acetyltransf_9 Acetyltransf_10 RVT-GII GIIM Tautomerase_2 Peptidase_C92 Neighborhood of RT #2 [77646, 82970] RVT-GII GIIM Dabb Imm-NTF2 Neighborhood of RT #3 [107497, 112552] DUF4177 RVT-GII GIIM VOC_CChe_VCA0619_like Tra5 Neighborhood of RT #4 [1734511, 1748390] PRK14200 SufI AE_Prim_S_like RVT-UG10 PRK09726 SLATT_5 RVT-UG17 SMC_prok_B Neighborhood of RT #5 [3228656, 3232928] DUF3265 RVT-GII GIIM COG4628 Feature: gene Location: 33922-34665 bp Feature: gene Location: 34814-35257 bp Feature: gene Location: 35902-37263 bp Ori: SUP55168.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36181-36874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361 81 -36874 bp Feature: domain Description: GIIM Note: maturase Location: 36958-37162 bp Feature: domain Description: GIIM Note: maturase Location: 36958-371 62 bp Feature: gene Location: 37818-38330 bp Ori: SUP55169.1 Feature: domain Description: Acetyltransf_9 Location: 37941-38187 bp Feature: domain Description: Acetyltransf_9 Location: 37941 -381 87 bp Feature: gene Location: 38494-38991 bp Ori: SUP55170.1 Feature: domain Description: Acetyltransf_10 Location: 38749-38944 bp Feature: domain Description: Acetyltransf_1 0 Location: 38749-38944 bp Feature: gene Location: 40987-41268 bp Feature: gene Location: 41341-41805 bp Feature: gene Location: 42636-43997 bp Ori: SUP55175.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42915-43608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4291 5-43608 bp Feature: domain Description: GIIM Note: maturase Location: 43692-43896 bp Feature: domain Description: GIIM Note: maturase Location: 43692-43896 bp Feature: gene Location: 44553-44939 bp Ori: SUP55176.1 Feature: domain Description: Tautomerase_2 Location: 44661-44889 bp Feature: domain Description: Tautomerase_2 Location: 44661 -44889 bp Feature: gene Location: 45570-46532 bp Ori: SUP55177.1 Feature: domain Description: Peptidase_C92 Location: 45813-46239 bp Feature: domain Description: Peptidase_C92 Location: 4581 3-46239 bp Feature: gene Location: 77646-77768 bp Feature: gene Location: 78059-78424 bp Feature: gene Location: 79051-80412 bp Ori: SUP55222.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79330-80023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79330-80023 bp Feature: domain Description: GIIM Note: maturase Location: 80107-80311 bp Feature: domain Description: GIIM Note: maturase Location: 801 07-8031 1 bp Feature: gene Location: 81579-81875 bp Ori: SUP55223.1 Feature: domain Description: Dabb Location: 81585-81870 bp Feature: domain Description: Dabb Location: 81 585-81 870 bp Feature: gene Location: 82515-82970 bp Ori: SUP55224.1 Feature: domain Description: Imm-NTF2 Location: 82593-82950 bp Feature: domain Description: Imm-NTF2 Location: 82593-82950 bp Feature: gene Location: 107497-107712 bp Ori: SUP55256.1 Feature: domain Description: DUF4177 Location: 107515-107707 bp Feature: domain Description: DUF41 77 Location: 1 0751 5-1 07707 bp Feature: gene Location: 107939-108328 bp Feature: gene Location: 108973-110334 bp Ori: SUP55258.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109252-109945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 09252-1 09945 bp Feature: domain Description: GIIM Note: maturase Location: 110029-110233 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 0029-1 1 0233 bp Feature: gene Location: 110900-111187 bp Ori: SUP55259.1 Feature: domain Description: VOC_CChe_VCA0619_like Location: 110921-111149 bp Feature: domain Description: VOC_CChe_VCA061 9_like Location: 1 1 0921 -1 1 1 1 49 bp Feature: gene Location: 111542-112552 bp Ori: SUP55260.1 Feature: domain Description: Tra5 Location: 111827-112406 bp Feature: domain Description: Tra5 Location: 1 1 1 827-1 1 2406 bp Feature: gene Location: 1734511-1734891 bp Ori: SUP56742.1 Gene: crcB Feature: domain Description: PRK14200 Location: 1734514-1734886 bp Feature: domain Description: PRK1 4200 Location: 1 73451 4-1 734886 bp Feature: gene Location: 1735015-1736400 bp Ori: SUP56743.1 Gene: mco Feature: domain Description: SufI Location: 1735030-1736395 bp Feature: domain Description: SufI Location: 1 735030-1 736395 bp Feature: gene Location: 1737814-1743141 bp Ori: SUP56744.1 Feature: domain Description: AE_Prim_S_like Location: 1737889-1738198 bp Feature: domain Description: AE_Prim_S_like Location: 1 737889-1 7381 98 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 1739149-1739806 bp Feature: RT Description: RVT-UG1 0 Note: UG1 0 RT Location: 1 7391 49-1 739806 bp Feature: gene Location: 1743546-1743800 bp Ori: SUP56745.1 Gene: hipB_1 Feature: domain Description: PRK09726 Location: 1743552-1743756 bp Feature: domain Description: PRK09726 Location: 1 743552-1 743756 bp Feature: gene Location: 1744270-1744905 bp Ori: SUP56746.1 Feature: domain Description: SLATT_5 Location: 1744276-1744867 bp Feature: domain Description: SLATT_5 Location: 1 744276-1 744867 bp Feature: gene Location: 1744907-1746238 bp Ori: SUP56747.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1745135-1745738 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 7451 35-1 745738 bp Feature: gene Location: 1746596-1748155 bp Ori: SUP56748.1 Feature: domain Description: SMC_prok_B Location: 1747538-1748054 bp Feature: domain Description: SMC_prok_B Location: 1 747538-1 748054 bp Feature: gene Location: 1748148-1748390 bp Feature: gene Location: 3228656-3229069 bp Feature: gene Location: 3229032-3229175 bp Ori: SUP58778.1 Feature: domain Description: DUF3265 Location: 3229092-3229173 bp Feature: domain Description: DUF3265 Location: 3229092-32291 73 bp Feature: gene Location: 3229694-3231055 bp Ori: SUP58779.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3229973-3230666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3229973-3230666 bp Feature: domain Description: GIIM Note: maturase Location: 3230750-3230954 bp Feature: domain Description: GIIM Note: maturase Location: 3230750-3230954 bp Feature: gene Location: 3231726-3231947 bp Ori: SUP58780.1 Feature: domain Description: COG4628 Location: 3231735-3231942 bp Feature: domain Description: COG4628 Location: 3231 735-3231 942 bp Feature: gene Location: 3232170-3232928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Acetyltransf_9 (pfam13527), Acetyltransf_10 (pfam13673), Tautomerase_2 (pfam14552), Peptidase_C92 (pfam05708), Dabb (smart00886), Imm-NTF2 (pfam15655), DUF4177 (pfam13783), VOC_CChe_VCA0619_like (cd08356)
Tra5 (COG2801), PRK14200 (fluoride efflux transporter CrcB), SufI (COG2132), AE_Prim_S_like (cl01287), RVT-UG10, PRK09726 (type II toxin-antitoxin system antitoxin HipB), SLATT_5 (pfam18160), RVT-UG17, SMC_prok_B (TIGR02168), DUF3265 (pfam11665)
COG4628 (Uncharacterized conserved protein, DUF2132 family )