myRT

myRT report for GCA_900460645.1_56080_E02

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Seq: UHJE01000003.1 Yersinia pseudotuberculosis strain NCTC1101 genome assembly, contig: ERS1859676SCcontig000003, whole genome shotgun sequence (311250 bp)
Overview 1 RT 1: 228667-234142 bp Neighborhood of RT #1 [228667, 234142] YeeP RVT_N RVT-GII GIIM DUF932 Feature: gene Location: 228667-229524 bp Feature: gene Location: 229613-230497 bp Feature: domain Description: YeeP Location: 229649-230495 bp Feature: domain Description: YeeP Location: 229649-230495 bp Feature: gene Location: 230857-232674 bp Feature: RT Description: RVT_N Location: 231028-231271 bp Feature: RT Description: RVT_N Location: 231 028-231 271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231316-231952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 31 6-231 952 bp Feature: domain Description: GIIM Note: maturase Location: 232003-232237 bp Feature: domain Description: GIIM Note: maturase Location: 232003-232237 bp Feature: gene Location: 233166-233825 bp Feature: domain Description: DUF932 Location: 233175-233793 bp Feature: domain Description: DUF932 Location: 2331 75-233793 bp Feature: gene Location: 234005-234142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeeP (COG3596), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF932 (pfam06067)

Seq: UHJE01000001.1 Yersinia pseudotuberculosis strain NCTC1101 genome assembly, contig: ERS1859676SCcontig000001, whole genome shotgun sequence (2509025 bp)
Overview 1 RT 1: 1769289-1776349 bp 2 RT 2: 2112962-2117668 bp 3 RT 3: 2236067-2241186 bp Neighborhood of RT #1 [1769289, 1776349] PRK05657 mutS1 RVT_N RVT-GII GIIM Neighborhood of RT #2 [2112962, 2117670] RVT_N RVT-GII GIIM DUF932 Antirestrict Neighborhood of RT #3 [2236067, 2241998] RVT-Retrons AAA_21 PRK13889 Feature: gene Location: 1769289-1770287 bp Feature: domain Description: PRK05657 Location: 1769304-1770279 bp Feature: domain Description: PRK05657 Location: 1769304-17702 79 bp Feature: gene Location: 1770724-1773279 bp Feature: domain Description: mutS1 Location: 1770754-1773268 bp Feature: domain Description: mutS1 Location: 1770754-17732 68 bp Feature: gene Location: 1773882-1775699 bp Feature: RT Description: RVT_N Location: 1774053-1774296 bp Feature: RT Description: RVT_N Location: 1774053-17742 96 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1774341-1774977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1774341-1774977 bp Feature: domain Description: GIIM Note: maturase Location: 1775028-1775262 bp Feature: domain Description: GIIM Note: maturase Location: 177502 8-17752 62 bp Feature: gene Location: 1776005-1776142 bp Feature: gene Location: 1776215-1776349 bp Feature: gene Location: 2112962-2113141 bp Feature: gene Location: 2113177-2113623 bp Feature: gene Location: 2113911-2115728 bp Feature: RT Description: RVT_N Location: 2114082-2114325 bp Feature: RT Description: RVT_N Location: 2 114082 -2 11432 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2114370-2115006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 114370-2 115006 bp Feature: domain Description: GIIM Note: maturase Location: 2115057-2115291 bp Feature: domain Description: GIIM Note: maturase Location: 2 115057-2 1152 91 bp Feature: gene Location: 2116220-2116882 bp Feature: domain Description: DUF932 Location: 2116229-2116847 bp Feature: domain Description: DUF932 Location: 2 1162 2 9-2 116847 bp Feature: gene Location: 2117239-2117670 bp Feature: domain Description: Antirestrict Location: 2117398-2117668 bp Feature: domain Description: Antirestrict Location: 2 117398-2 117668 bp Feature: gene Location: 2236067-2236621 bp Feature: gene Location: 2236722-2236943 bp Feature: gene Location: 2236994-2238097 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2237141-2237696 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 2 37141-2 2 37696 bp Feature: gene Location: 2238264-2240381 bp Feature: domain Description: AAA_21 Location: 2238339-2239248 bp Feature: domain Description: AAA_2 1 Location: 2 2 38339-2 2 392 48 bp Feature: gene Location: 2240601-2241998 bp Feature: domain Description: PRK13889 Location: 2240604-2241186 bp Feature: domain Description: PRK13889 Location: 2 2 40604-2 2 41186 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05657 (RNA polymerase sigma factor RpoS; Validated), mutS1 (TIGR01070), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF932 (pfam06067), Antirestrict (pfam03230), RVT-Retrons, AAA_21 (pfam13304), PRK13889 (conjugal transfer relaxase TraA; Provisional)