myRT

myRT report for GCA_900460685.1_52592_C01

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Seq: UHJC01000001.1 Yersinia pseudotuberculosis strain NCTC8580 genome assembly, contig: ERS1473311SCcontig000001, whole genome shotgun sequence (4980292 bp)
Overview 1 RT 1: 611937-617705 bp 2 RT 2: 2221321-2225787 bp 3 RT 3: 3113899-3122017 bp Neighborhood of RT #1 [611937, 617705] DUF932 RVT_N RVT-GII GIIM YeeP Neighborhood of RT #2 [2221321, 2225792] PRK12456 ARO8 RVT_N RVT-GII GIIM ARO8 Neighborhood of RT #3 [3113899, 3122055] PRK10200 PRK09776 GGDEF RVT_N RVT-GII GIIM PRK07967 mnmC Feature: gene Location: 611937-612074 bp Feature: gene Location: 612547-613206 bp Feature: domain Description: DUF932 Location: 612556-613174 bp Feature: domain Description: DUF932 Location: 61 2556-61 31 74 bp Feature: gene Location: 613698-615515 bp Feature: RT Description: RVT_N Location: 613869-614112 bp Feature: RT Description: RVT_N Location: 61 3869-61 41 1 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 614157-614793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 41 57-61 4793 bp Feature: domain Description: GIIM Note: maturase Location: 614844-615078 bp Feature: domain Description: GIIM Note: maturase Location: 61 4844-61 5078 bp Feature: gene Location: 615875-616759 bp Feature: domain Description: YeeP Location: 615896-616757 bp Feature: domain Description: YeeP Location: 61 5896-61 6757 bp Feature: gene Location: 616848-617705 bp Feature: gene Location: 2221321-2221944 bp Feature: domain Description: PRK12456 Location: 2221348-2221942 bp Feature: domain Description: PRK1 2456 Location: 2221 348-2221 942 bp Feature: gene Location: 2222269-2222790 bp Feature: domain Description: ARO8 Location: 2222317-2222743 bp Feature: domain Description: ARO8 Location: 222231 7-2222743 bp Feature: gene Location: 2222832-2224649 bp Feature: RT Description: RVT_N Location: 2223003-2223246 bp Feature: RT Description: RVT_N Location: 2223003-2223246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2223291-2223927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2223291 -2223927 bp Feature: domain Description: GIIM Note: maturase Location: 2223978-2224212 bp Feature: domain Description: GIIM Note: maturase Location: 2223978-222421 2 bp Feature: gene Location: 2224888-2225031 bp Feature: gene Location: 2225073-2225792 bp Feature: domain Description: ARO8 Location: 2225118-2225787 bp Feature: domain Description: ARO8 Location: 22251 1 8-2225787 bp Feature: gene Location: 3113899-3114594 bp Feature: domain Description: PRK10200 Location: 3113905-3114589 bp Feature: domain Description: PRK1 0200 Location: 31 1 3905-31 1 4589 bp Feature: gene Location: 3114663-3115670 bp Feature: domain Description: PRK09776 Location: 3114753-3115092 bp Feature: domain Description: PRK09776 Location: 31 1 4753-31 1 5092 bp Feature: domain Description: GGDEF Location: 3115206-3115662 bp Feature: domain Description: GGDEF Location: 31 1 5206-31 1 5662 bp Feature: gene Location: 3116579-3118396 bp Feature: RT Description: RVT_N Location: 3116750-3116993 bp Feature: RT Description: RVT_N Location: 31 1 6750-31 1 6993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3117038-3117674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 7038-31 1 7674 bp Feature: domain Description: GIIM Note: maturase Location: 3117725-3117959 bp Feature: domain Description: GIIM Note: maturase Location: 31 1 7725-31 1 7959 bp Feature: gene Location: 3118591-3119814 bp Feature: domain Description: PRK07967 Location: 3118594-3119809 bp Feature: domain Description: PRK07967 Location: 31 1 8594-31 1 9809 bp Feature: gene Location: 3119986-3122055 bp Feature: domain Description: mnmC Location: 3119995-3122017 bp Feature: domain Description: mnmC Location: 31 1 9995-31 2201 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), YeeP (COG3596), PRK12456 (Na(+)-translocating NADH-quinone reductase subunit E; Provisional), ARO8 (COG1167), PRK10200 (putative racemase; Provisional), PRK09776 (putative diguanylate cyclase; Provisional), GGDEF (TIGR00254)
PRK07967 (beta-ketoacyl-ACP synthase I), mnmC (PRK01747)