myRT

myRT report for GCA_900461125.1_49699_D02

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Seq: UFVT01000001.1 Blautia coccoides strain NCTC11035 genome assembly, contig: ERS1497478SCcontig000001, whole genome shotgun sequence (6097341 bp)
Overview 1 RT 1: 718122-726451 bp 2 RT 2: 2487166-2490300 bp 3 RT 3: 2722355-2731876 bp 4 RT 4: 2789501-2802641 bp Neighborhood of RT #1 [718122, 726468] DUF3789 RVT-GII Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitA_C_like RVT-GII HNHc LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 Neighborhood of RT #2 [2487166, 2490300] F420_ligase RVT-Retrons Neighborhood of RT #3 [2722355, 2732295] IstB_IS21_ATP IstB_IS21 COG4584 RVT-UG2 DUF2971 RVT-Retrons AAA_15 Neighborhood of RT #4 [2789501, 2802649] TIGR04076 RVT-GII GIIM Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitA_C_like RVT_N RVT-GII COG4646 KOG0390 TnpV Feature: gene Location: 718122-718256 bp Feature: domain Description: DUF3789 Location: 718134-718227 bp Feature: domain Description: DUF3789 Location: 71 81 34-71 8227 bp Feature: gene Location: 718340-718489 bp Feature: gene Location: 718998-719792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 719331-719721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 9331 -71 9721 bp Feature: gene Location: 719830-720840 bp Feature: domain Description: Phage_int_SAM_1 Location: 719884-720121 bp Feature: domain Description: Phage_int_SAM_1 Location: 71 9884-7201 21 bp Feature: domain Description: INT_RitC_C_like Location: 720211-720754 bp Feature: domain Description: INT_RitC_C_like Location: 72021 1 -720754 bp Feature: gene Location: 720821-721804 bp Feature: domain Description: INT_RitB_C_like Location: 721157-721730 bp Feature: domain Description: INT_RitB_C_like Location: 721 1 57-721 730 bp Feature: gene Location: 721238-721747 bp Feature: gene Location: 721797-723032 bp Feature: domain Description: Phage_int_SAM_1 Location: 722169-722370 bp Feature: domain Description: Phage_int_SAM_1 Location: 7221 69-722370 bp Feature: domain Description: INT_RitA_C_like Location: 722463-723006 bp Feature: domain Description: INT_RitA_C_like Location: 722463-723006 bp Feature: gene Location: 723380-724366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 723389-723584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 723389-723584 bp Feature: domain Description: HNHc Note: nucleases Location: 724139-724277 bp Feature: domain Description: HNHc Note: nucleases Location: 7241 39-724277 bp Feature: gene Location: 724368-725984 bp Feature: domain Description: LZ_Tnp_IS66 Location: 724512-724725 bp Feature: domain Description: LZ_Tnp_IS66 Location: 72451 2-724725 bp Feature: domain Description: zf-IS66 Location: 724752-724884 bp Feature: domain Description: zf-IS66 Location: 724752-724884 bp Feature: domain Description: DDE_Tnp_IS66 Location: 724956-725811 bp Feature: domain Description: DDE_Tnp_IS66 Location: 724956-72581 1 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 725832-725949 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 725832-725949 bp Feature: gene Location: 726127-726468 bp Feature: domain Description: TnpB_IS66 Location: 726157-726451 bp Feature: domain Description: TnpB_IS66 Location: 7261 57-726451 bp Feature: gene Location: 2487166-2488413 bp Feature: domain Description: F420_ligase Location: 2487244-2488387 bp Feature: domain Description: F420_ligase Location: 2487244-2488387 bp Feature: gene Location: 2488524-2488679 bp Feature: gene Location: 2488754-2489773 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2488919-2489474 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 248891 9-2489474 bp Feature: gene Location: 2489621-2490076 bp Feature: gene Location: 2490166-2490300 bp Feature: gene Location: 2722355-2723131 bp Feature: domain Description: IstB_IS21_ATP Location: 2722430-2722508 bp Feature: domain Description: IstB_IS21 _ATP Location: 2722430-2722508 bp Feature: domain Description: IstB_IS21 Location: 2722520-2723051 bp Feature: domain Description: IstB_IS21 Location: 2722520-2723051 bp Feature: gene Location: 2723138-2724676 bp Feature: domain Description: COG4584 Location: 2723213-2724047 bp Feature: domain Description: COG4584 Location: 272321 3-2724047 bp Feature: gene Location: 2725248-2726615 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2725503-2726316 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2725503-272631 6 bp Feature: gene Location: 2727223-2728113 bp Feature: domain Description: DUF2971 Location: 2727547-2727820 bp Feature: domain Description: DUF2971 Location: 2727547-2727820 bp Feature: gene Location: 2728177-2728428 bp Feature: gene Location: 2728589-2729641 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2728763-2729321 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2728763-2729321 bp Feature: gene Location: 2729778-2730701 bp Feature: gene Location: 2730736-2732295 bp Feature: domain Description: AAA_15 Location: 2730739-2731876 bp Feature: domain Description: AAA_1 5 Location: 2730739-2731 876 bp Feature: gene Location: 2789501-2789911 bp Feature: domain Description: TIGR04076 Location: 2789507-2789831 bp Feature: domain Description: TIGR04076 Location: 2789507-2789831 bp Feature: gene Location: 2790065-2791054 bp Feature: gene Location: 2791055-2792002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2791058-2791313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2791 058-2791 31 3 bp Feature: domain Description: GIIM Note: maturase Location: 2791367-2791598 bp Feature: domain Description: GIIM Note: maturase Location: 2791 367-2791 598 bp Feature: gene Location: 2792119-2793129 bp Feature: domain Description: Phage_int_SAM_1 Location: 2792173-2792410 bp Feature: domain Description: Phage_int_SAM_1 Location: 27921 73-279241 0 bp Feature: domain Description: INT_RitC_C_like Location: 2792500-2793043 bp Feature: domain Description: INT_RitC_C_like Location: 2792500-2793043 bp Feature: gene Location: 2793110-2794093 bp Feature: domain Description: INT_RitB_C_like Location: 2793446-2794019 bp Feature: domain Description: INT_RitB_C_like Location: 2793446-279401 9 bp Feature: gene Location: 2793527-2794036 bp Feature: gene Location: 2794086-2795321 bp Feature: domain Description: Phage_int_SAM_1 Location: 2794458-2794659 bp Feature: domain Description: Phage_int_SAM_1 Location: 2794458-2794659 bp Feature: domain Description: INT_RitA_C_like Location: 2794752-2795295 bp Feature: domain Description: INT_RitA_C_like Location: 2794752-2795295 bp Feature: gene Location: 2795476-2796240 bp Feature: domain Description: RVT_N Location: 2795521-2795764 bp Feature: domain Description: RVT_N Location: 2795521 -2795764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2795809-2796178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2795809-27961 78 bp Feature: gene Location: 2796819-2802299 bp Feature: domain Description: COG4646 Location: 2799237-2801805 bp Feature: domain Description: COG4646 Location: 2799237-2801 805 bp Feature: domain Description: KOG0390 Location: 2802153-2802285 bp Feature: domain Description: KOG0390 Location: 28021 53-2802285 bp Feature: gene Location: 2802395-2802649 bp Feature: domain Description: TnpV Location: 2802398-2802641 bp Feature: domain Description: TnpV Location: 2802398-2802641 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3789 (pfam12664), RVT-GII, Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), INT_RitB_C_like (cd00797), INT_RitA_C_like (cd01188), HNHc (smart00507), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)
DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717), F420_ligase (pfam01996), RVT-Retrons, IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), COG4584 (Transposase ), RVT-UG2, DUF2971 (pfam11185), AAA_15 (pfam13175)
TIGR04076 (TIGR04076 family protein), GIIM (pfam08388), RVT_N (pfam13655), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG0390 (KOG0390, DNA repair protein, SNF2 family ), TnpV (pfam14198)