myRT

myRT report for GCA_900461145.1_50618_C02

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Seq: UAVZ01000001.1 Clostridium perfringens strain NCTC8359 genome assembly, contig: ERS1324132SCcontig000001, whole genome shotgun sequence (2935352 bp)
Overview 1 RT 1: 1169197-1174946 bp 2 RT 2: 1241612-1248874 bp Neighborhood of RT #1 [1169197, 1174946] SLATT_5 RVT-UG17 clostrip Neighborhood of RT #2 [1241612, 1248879] RMtype1_S_HmoORF3075P-TRD1-CR1_like RVT-UG15 COG0610 HsdM Feature: gene Location: 1169197-1169700 bp Feature: gene Location: 1170055-1170636 bp Ori: SQB23891.1 Feature: domain Description: SLATT_5 Location: 1170100-1170616 bp Feature: domain Description: SLATT_5 Location: 1 1 701 00-1 1 7061 6 bp Feature: gene Location: 1170627-1171985 bp Ori: SQB23892.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1170831-1171410 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 1 70831 -1 1 71 41 0 bp Feature: gene Location: 1172270-1173838 bp Ori: SQB23893.1 Gene: cloSI Feature: domain Description: clostrip Location: 1172426-1173836 bp Feature: domain Description: clostrip Location: 1 1 72426-1 1 73836 bp Feature: gene Location: 1174749-1174946 bp Feature: gene Location: 1241612-1242103 bp Ori: SQB23958.1 Feature: domain Description: RMtype1_S_HmoORF3075P-TRD1-CR1_like Location: 1241672-1242065 bp Feature: domain Description: RMtype1 _S_HmoORF3075P-TRD1 -CR1 _like Location: 1 241 672-1 242065 bp Feature: gene Location: 1242231-1242803 bp Feature: gene Location: 1242886-1244376 bp Ori: SQB23960.1 Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 1243312-1243705 bp Feature: RT Description: RVT-UG1 5 Note: UG1 5 RT Location: 1 24331 2-1 243705 bp Feature: gene Location: 1244515-1247271 bp Ori: SQB23961.1 Gene: hsdR_2 Feature: domain Description: COG0610 Location: 1244524-1247209 bp Feature: domain Description: COG061 0 Location: 1 244524-1 247209 bp Feature: gene Location: 1247335-1248879 bp Ori: SQB23962.1 Gene: hsdM_2 Feature: domain Description: HsdM Location: 1247362-1248874 bp Feature: domain Description: HsdM Location: 1 247362-1 248874 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, clostrip, RMtype1_S_HmoORF3075P-TRD1-CR1_like (cd17520), RVT-UG15, COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), HsdM (COG0286)