myRT

myRT report for GCA_900461195.1_43071_H02

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Seq: UFYW01000002.1 Enterococcus gallinarum strain NCTC12360 genome assembly, contig: ERS986339SCcontig000002, whole genome shotgun sequence (48366 bp)
Overview 1 RT 1: 19291-24443 bp Neighborhood of RT #1 [19291, 24448] COG3464 RVT-GII HNHc PRK03103 PolY_Pol_V_umuC Feature: gene Location: 19291-19467 bp Feature: domain Description: COG3464 Location: 19309-19426 bp Feature: domain Description: COG3464 Location: 1 9309-1 9426 bp Feature: gene Location: 19904-20320 bp Feature: gene Location: 20423-22228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20720-21416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20720-21 41 6 bp Feature: domain Description: HNHc Note: nucleases Location: 21980-22115 bp Feature: domain Description: HNHc Note: nucleases Location: 21 980-221 1 5 bp Feature: gene Location: 23010-23318 bp Feature: domain Description: PRK03103 Location: 23019-23265 bp Feature: domain Description: PRK031 03 Location: 2301 9-23265 bp Feature: gene Location: 23327-24448 bp Feature: domain Description: PolY_Pol_V_umuC Location: 23465-24443 bp Feature: domain Description: PolY_Pol_V_umuC Location: 23465-24443 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3464 (Transposase ), RVT-GII, HNHc (smart00507), PRK03103 (DNA polymerase IV; Reviewed), PolY_Pol_V_umuC (cd01700)

Seq: UFYW01000001.1 Enterococcus gallinarum strain NCTC12360 genome assembly, contig: ERS986339SCcontig000001, whole genome shotgun sequence (3817980 bp)
Overview 1 RT 1: 1924578-1931920 bp 2 RT 2: 2075347-2079210 bp 3 RT 3: 2086365-2093379 bp 4 RT 4: 2523697-2530989 bp Neighborhood of RT #1 [1924578, 1931920] TroA_a Lysozyme_like Spr RVT-GII HNHc TpcC Neighborhood of RT #2 [2075347, 2079236] Dcm RVT-GII HNHc dcm Cyt_C5_DNA_methylase Neighborhood of RT #3 [2086365, 2093379] Lysozyme_like Spr RVT-GII HNHc TpcC Neighborhood of RT #4 [2523697, 2531162] TrbL Lysozyme_like Spr RVT-GII HNHc TpcC AcrR Feature: gene Location: 1924578-1926815 bp Feature: domain Description: TroA_a Location: 1926042-1926270 bp Feature: domain Description: TroA_a Location: 192 6042 -192 62 70 bp Feature: gene Location: 1926826-1927788 bp Feature: domain Description: Lysozyme_like Location: 1926979-1927441 bp Feature: domain Description: Lysozyme_like Location: 192 6979-192 7441 bp Feature: domain Description: Spr Location: 1927471-1927771 bp Feature: domain Description: Spr Location: 192 7471-192 7771 bp Feature: gene Location: 1928502-1930331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1928817-1929516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192 8817-192 9516 bp Feature: domain Description: HNHc Note: nucleases Location: 1930041-1930206 bp Feature: domain Description: HNHc Note: nucleases Location: 1930041-19302 06 bp Feature: gene Location: 1930509-1931426 bp Feature: domain Description: TpcC Location: 1930743-1931412 bp Feature: domain Description: TpcC Location: 1930743-1931412 bp Feature: gene Location: 1931789-1931920 bp Feature: gene Location: 2075347-2075595 bp Feature: domain Description: Dcm Location: 2075350-2075575 bp Feature: domain Description: Dcm Location: 2 075350-2 075575 bp Feature: gene Location: 2075986-2076204 bp Feature: gene Location: 2076319-2078187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2076634-2077351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 076634-2 077351 bp Feature: domain Description: HNHc Note: nucleases Location: 2077927-2078062 bp Feature: domain Description: HNHc Note: nucleases Location: 2 07792 7-2 078062 bp Feature: gene Location: 2078505-2078909 bp Feature: domain Description: dcm Location: 2078508-2078673 bp Feature: domain Description: dcm Location: 2 078508-2 078673 bp Feature: gene Location: 2078925-2079236 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 2078991-2079210 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 2 078991-2 0792 10 bp Feature: gene Location: 2086365-2088488 bp Feature: gene Location: 2088485-2089435 bp Feature: domain Description: Lysozyme_like Location: 2088632-2089094 bp Feature: domain Description: Lysozyme_like Location: 2 088632 -2 089094 bp Feature: domain Description: Spr Location: 2089121-2089418 bp Feature: domain Description: Spr Location: 2 08912 1-2 089418 bp Feature: gene Location: 2090149-2091978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2090464-2091163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 090464-2 091163 bp Feature: domain Description: HNHc Note: nucleases Location: 2091688-2091853 bp Feature: domain Description: HNHc Note: nucleases Location: 2 091688-2 091853 bp Feature: gene Location: 2092155-2093066 bp Feature: domain Description: TpcC Location: 2092386-2093052 bp Feature: domain Description: TpcC Location: 2 092 386-2 093052 bp Feature: gene Location: 2093092-2093379 bp Feature: gene Location: 2523697-2525838 bp Feature: domain Description: TrbL Location: 2524606-2524963 bp Feature: domain Description: TrbL Location: 2 52 4606-2 52 4963 bp Feature: gene Location: 2525835-2526785 bp Feature: domain Description: Lysozyme_like Location: 2525982-2526444 bp Feature: domain Description: Lysozyme_like Location: 2 52 5982 -2 52 6444 bp Feature: domain Description: Spr Location: 2526477-2526768 bp Feature: domain Description: Spr Location: 2 52 6477-2 52 6768 bp Feature: gene Location: 2527499-2529328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2527814-2528513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 52 7814-2 52 8513 bp Feature: domain Description: HNHc Note: nucleases Location: 2529038-2529203 bp Feature: domain Description: HNHc Note: nucleases Location: 2 52 9038-2 52 92 03 bp Feature: gene Location: 2529511-2530404 bp Feature: domain Description: TpcC Location: 2529727-2530396 bp Feature: domain Description: TpcC Location: 2 52 972 7-2 530396 bp Feature: gene Location: 2530521-2531162 bp Feature: domain Description: AcrR Location: 2530545-2530989 bp Feature: domain Description: AcrR Location: 2 530545-2 530989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TroA_a (cd01148), Lysozyme_like (pfam13702), Spr (COG0791), RVT-GII, HNHc (smart00507), TpcC (pfam12642), Dcm (COG0270), dcm (TIGR00675), Cyt_C5_DNA_methylase (cl30459), TrbL (pfam04610)
AcrR (COG1309)