myRT

myRT report for GCA_900461275.1_51765_A02

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Seq: UFXK01000003.1 [Clostridium] symbiosum strain NCTC13233 genome assembly, contig: ERS1420646SCcontig000003, whole genome shotgun sequence (5034894 bp)
Overview 1 RT 1: 1484334-1492713 bp 2 RT 2: 1701599-1706695 bp 3 RT 3: 2042118-2048162 bp 4 RT 4: 3369081-3377264 bp 5 RT 5: 4691417-4698407 bp 6 RT 6: 4792535-4797272 bp Neighborhood of RT #1 [1484334, 1492814] RVT-GII Intron_maturas2 TraC-F-type RVT-GII Intron_maturas2 HNHc VirB4_CagE VirB4_CagE PrgI Neighborhood of RT #2 [1701599, 1706703] YuiF RVT-Retrons LysR MviM MviM Neighborhood of RT #3 [2042118, 2048224] Flavodoxin_3 RVT-GII GIIM MrcB MrcB IMPACT_YIGZ Neighborhood of RT #4 [3369081, 3377264] RVT-GII Intron_maturas2 TraC-F-type RVT-GII Intron_maturas2 HNHc VirB4_CagE VirB4_CagE Neighborhood of RT #5 [4691417, 4698409] MhpC RVT-GII GIIM M14_ASTE_ASPA-like Ggt Neighborhood of RT #6 [4792535, 4797283] PRK12318 RVT-GII GIIM KdpD VicK Feature: gene Location: 1484334-1485143 bp Feature: gene Location: 1485061-1485411 bp Feature: gene Location: 1485520-1487310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1485787-1486600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 485787-1 486600 bp Feature: domain Description: Intron_maturas2 Location: 1486684-1486978 bp Feature: domain Description: Intron_maturas2 Location: 1 486684-1 486978 bp Feature: gene Location: 1487803-1489071 bp Feature: domain Description: TraC-F-type Location: 1487869-1489033 bp Feature: domain Description: TraC-F-type Location: 1 487869-1 489033 bp Feature: gene Location: 1489161-1490960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1489431-1490244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 489431 -1 490244 bp Feature: domain Description: Intron_maturas2 Location: 1490325-1490616 bp Feature: domain Description: Intron_maturas2 Location: 1 490325-1 49061 6 bp Feature: domain Description: HNHc Note: nucleases Location: 1490784-1490940 bp Feature: domain Description: HNHc Note: nucleases Location: 1 490784-1 490940 bp Feature: gene Location: 1491494-1492438 bp Feature: domain Description: VirB4_CagE Location: 1491584-1491824 bp Feature: domain Description: VirB4_CagE Location: 1 491 584-1 491 824 bp Feature: domain Description: VirB4_CagE Location: 1492271-1492388 bp Feature: domain Description: VirB4_CagE Location: 1 492271 -1 492388 bp Feature: gene Location: 1492392-1492814 bp Feature: domain Description: PrgI Location: 1492440-1492713 bp Feature: domain Description: PrgI Location: 1 492440-1 49271 3 bp Feature: gene Location: 1701599-1702921 bp Feature: domain Description: YuiF Location: 1701620-1702919 bp Feature: domain Description: YuiF Location: 1 701 620-1 70291 9 bp Feature: gene Location: 1702979-1703191 bp Feature: gene Location: 1703219-1704205 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1703384-1703939 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 703384-1 703939 bp Feature: gene Location: 1704253-1705197 bp Feature: domain Description: LysR Location: 1704292-1705150 bp Feature: domain Description: LysR Location: 1 704292-1 7051 50 bp Feature: gene Location: 1705519-1706703 bp Feature: domain Description: MviM Location: 1705540-1705837 bp Feature: domain Description: MviM Location: 1 705540-1 705837 bp Feature: domain Description: MviM Location: 1705912-1706695 bp Feature: domain Description: MviM Location: 1 70591 2-1 706695 bp Feature: gene Location: 2042118-2042690 bp Feature: domain Description: Flavodoxin_3 Location: 2042130-2042652 bp Feature: domain Description: Flavodoxin_3 Location: 20421 30-2042652 bp Feature: gene Location: 2042698-2042883 bp Feature: gene Location: 2043231-2044622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2043546-2044173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2043546-20441 73 bp Feature: domain Description: GIIM Note: maturase Location: 2044227-2044455 bp Feature: domain Description: GIIM Note: maturase Location: 2044227-2044455 bp Feature: gene Location: 2044699-2047416 bp Feature: domain Description: MrcB Location: 2044744-2045836 bp Feature: domain Description: MrcB Location: 2044744-2045836 bp Feature: domain Description: MrcB Location: 2046007-2046991 bp Feature: domain Description: MrcB Location: 2046007-2046991 bp Feature: gene Location: 2047574-2048224 bp Feature: domain Description: IMPACT_YIGZ Location: 2047619-2048162 bp Feature: domain Description: IMPACT_YIGZ Location: 204761 9-20481 62 bp Feature: gene Location: 3369081-3369413 bp Feature: gene Location: 3369568-3369840 bp Feature: gene Location: 3369964-3371754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3370231-3371044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3370231 -3371 044 bp Feature: domain Description: Intron_maturas2 Location: 3371128-3371425 bp Feature: domain Description: Intron_maturas2 Location: 3371 1 28-3371 425 bp Feature: gene Location: 3372283-3373557 bp Feature: domain Description: TraC-F-type Location: 3372355-3373519 bp Feature: domain Description: TraC-F-type Location: 3372355-337351 9 bp Feature: gene Location: 3373647-3375446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3373917-3374730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337391 7-3374730 bp Feature: domain Description: Intron_maturas2 Location: 3374811-3375102 bp Feature: domain Description: Intron_maturas2 Location: 337481 1 -33751 02 bp Feature: domain Description: HNHc Note: nucleases Location: 3375270-3375426 bp Feature: domain Description: HNHc Note: nucleases Location: 3375270-3375426 bp Feature: gene Location: 3375980-3376909 bp Feature: domain Description: VirB4_CagE Location: 3376061-3376382 bp Feature: domain Description: VirB4_CagE Location: 3376061 -3376382 bp Feature: domain Description: VirB4_CagE Location: 3376742-3376853 bp Feature: domain Description: VirB4_CagE Location: 3376742-3376853 bp Feature: gene Location: 3376770-3377264 bp Feature: gene Location: 4691417-4692307 bp Feature: domain Description: MhpC Location: 4691438-4692230 bp Feature: domain Description: MhpC Location: 4691 438-4692230 bp Feature: gene Location: 4692408-4692878 bp Feature: gene Location: 4693235-4694533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4693493-4694180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4693493-46941 80 bp Feature: domain Description: GIIM Note: maturase Location: 4694258-4694465 bp Feature: domain Description: GIIM Note: maturase Location: 4694258-4694465 bp Feature: gene Location: 4694972-4696039 bp Feature: domain Description: M14_ASTE_ASPA-like Location: 4695428-4696034 bp Feature: domain Description: M1 4_ASTE_ASPA-like Location: 4695428-4696034 bp Feature: gene Location: 4696586-4698409 bp Feature: domain Description: Ggt Location: 4696817-4698407 bp Feature: domain Description: Ggt Location: 469681 7-4698407 bp Feature: gene Location: 4792535-4793407 bp Feature: domain Description: PRK12318 Location: 4792547-4793402 bp Feature: domain Description: PRK1 231 8 Location: 4792547-4793402 bp Feature: gene Location: 4793599-4793856 bp Feature: gene Location: 4794057-4795367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4794327-4795014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4794327-479501 4 bp Feature: domain Description: GIIM Note: maturase Location: 4795092-4795299 bp Feature: domain Description: GIIM Note: maturase Location: 4795092-4795299 bp Feature: gene Location: 4795806-4796096 bp Feature: gene Location: 4796159-4797283 bp Feature: domain Description: KdpD Location: 4796192-4796567 bp Feature: domain Description: KdpD Location: 47961 92-4796567 bp Feature: domain Description: VicK Location: 4796588-4797272 bp Feature: domain Description: VicK Location: 4796588-4797272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), TraC-F-type (TIGR02746), HNHc (smart00507), VirB4_CagE (TIGR00929), PrgI (pfam12666), YuiF (COG2056), RVT-Retrons, LysR (COG0583), MviM (COG0673)
Flavodoxin_3 (pfam12641), GIIM (pfam08388), MrcB (COG0744), IMPACT_YIGZ (TIGR00257), MhpC (COG0596), M14_ASTE_ASPA-like (cd06910), Ggt (COG0405), PRK12318 (methionyl aminopeptidase), KdpD (pfam02702), VicK (COG5002)

Seq: UFXK01000002.1 [Clostridium] symbiosum strain NCTC13233 genome assembly, contig: ERS1420646SCcontig000002, whole genome shotgun sequence (13462 bp)
Overview 1 RT 1: 10053-13131 bp Neighborhood of RT #1 [10053, 13460] Flavodoxin_3 RVT-GII GIIM MrcA Feature: gene Location: 10053-10625 bp Feature: domain Description: Flavodoxin_3 Location: 10065-10587 bp Feature: domain Description: Flavodoxin_3 Location: 10065-10587 bp Feature: gene Location: 10633-10818 bp Feature: gene Location: 11255-12556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11480-12107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11480-12 107 bp Feature: domain Description: GIIM Note: maturase Location: 12161-12389 bp Feature: domain Description: GIIM Note: maturase Location: 12 161-12 389 bp Feature: gene Location: 12633-13460 bp Feature: domain Description: MrcA Location: 12639-13131 bp Feature: domain Description: MrcA Location: 12 639-13131 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Flavodoxin_3 (pfam12641), RVT-GII, GIIM (pfam08388), MrcA (COG5009)