myRT

myRT report for GCA_900461545.1_45232_C01

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Seq: UGOO01000001.1 Legionella pneumophila strain NCTC12025 genome assembly, contig: ERS1080595SCcontig000001, whole genome shotgun sequence (3503588 bp)
Overview 1 RT 1: 69437-75357 bp 2 RT 2: 2254580-2259396 bp Neighborhood of RT #1 [69437, 75431] DUF5338 RVT-UG5 Arm-DNA-bind_3 INT_P4_C Neighborhood of RT #2 [2254580, 2259527] NTP-PPase_MazG_Cterm Tnp_DNA_bind DDE_Tnp_1 Dimer_Tnp_Tn5 RVT_N RVT-GII GIIM Tra_M Feature: gene Location: 69437-69709 bp Feature: gene Location: 70037-70402 bp Feature: domain Description: DUF5338 Location: 70046-70253 bp Feature: domain Description: DUF5338 Location: 70046-70253 bp Feature: gene Location: 70707-73796 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 71217-71745 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 71 21 7-71 745 bp Feature: gene Location: 73893-74063 bp Feature: gene Location: 74169-75431 bp Feature: domain Description: Arm-DNA-bind_3 Location: 74220-74472 bp Feature: domain Description: Arm-DNA-bind_3 Location: 74220-74472 bp Feature: domain Description: INT_P4_C Location: 74826-75357 bp Feature: domain Description: INT_P4_C Location: 74826-75357 bp Feature: gene Location: 2254580-2254957 bp Feature: domain Description: NTP-PPase_MazG_Cterm Location: 2254607-2254943 bp Feature: domain Description: NTP-PPase_MazG_Cterm Location: 2254607-2254943 bp Feature: gene Location: 2255263-2256714 bp Feature: domain Description: Tnp_DNA_bind Location: 2255302-2255470 bp Feature: domain Description: Tnp_DNA_bind Location: 2255302-2255470 bp Feature: domain Description: DDE_Tnp_1 Location: 2256127-2256421 bp Feature: domain Description: DDE_Tnp_1 Location: 22561 27-2256421 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 2256427-2256706 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 2256427-2256706 bp Feature: gene Location: 2256785-2258305 bp Feature: domain Description: RVT_N Location: 2256842-2257085 bp Feature: domain Description: RVT_N Location: 2256842-2257085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2257130-2257754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22571 30-2257754 bp Feature: domain Description: GIIM Note: maturase Location: 2257805-2258039 bp Feature: domain Description: GIIM Note: maturase Location: 2257805-2258039 bp Feature: gene Location: 2258541-2258693 bp Feature: gene Location: 2259153-2259527 bp Feature: domain Description: Tra_M Location: 2259201-2259396 bp Feature: domain Description: Tra_M Location: 2259201 -2259396 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5338 (pfam17273), RVT-UG5, Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801), NTP-PPase_MazG_Cterm (cd11529), Tnp_DNA_bind (pfam14706), DDE_Tnp_1 (pfam01609), Dimer_Tnp_Tn5 (pfam02281), RVT_N (pfam13655), RVT-GII
GIIM (pfam08388), Tra_M (pfam05261)