myRT

myRT report for GCA_900465275.1_Frankia_Ea1-12

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Seq: UBIZ01000590.1 Frankia sp. Ea1.12 isolate Framoi1121 genome assembly, contig: FMEAI12_Contig_63, whole genome shotgun sequence (251 bp)
Overview 1 RT 1: 2-131 bp Neighborhood of RT #1 [2, 139] RVT-GII Feature: gene Location: 2-139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-1 31 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: UBIZ01000564.1 Frankia sp. Ea1.12 isolate Framoi1121 genome assembly, contig: FMEAI12_Contig_606, whole genome shotgun sequence (4242 bp)
Overview 1 RT 1: 590-4240 bp Neighborhood of RT #1 [590, 4240] RVT-GII RVT-GII GIIM RVT-GII GIIM Feature: gene Location: 590-1336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 815-1307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 815-1307 bp Feature: gene Location: 1884-3134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2100-2757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 100-2 757 bp Feature: domain Description: GIIM Note: maturase Location: 2835-3069 bp Feature: domain Description: GIIM Note: maturase Location: 2 835-3069 bp Feature: gene Location: 3237-3785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3246-3402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 46-3402 bp Feature: domain Description: GIIM Note: maturase Location: 3486-3711 bp Feature: domain Description: GIIM Note: maturase Location: 3486-3711 bp Feature: gene Location: 3875-4240 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: UBIZ01000674.1 Frankia sp. Ea1.12 isolate Framoi1121 genome assembly, contig: FMEAI12_Contig_705, whole genome shotgun sequence (22740 bp)
Overview 1 RT 1: 18667-22000 bp Neighborhood of RT #1 [18667, 22000] RpoE RVT-GII GIIM Feature: gene Location: 18667-19494 bp Feature: gene Location: 19600-20355 bp Feature: domain Description: RpoE Location: 19777-20299 bp Feature: domain Description: RpoE Location: 19777-20299 bp Feature: gene Location: 20396-20992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20459-20573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20459-20573 bp Feature: domain Description: GIIM Note: maturase Location: 20660-20804 bp Feature: domain Description: GIIM Note: maturase Location: 20660-20804 bp Feature: gene Location: 20754-21038 bp Feature: gene Location: 21761-22000 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpoE (COG3343), RVT-GII, GIIM (pfam08388)

Seq: UBIZ01000433.1 Frankia sp. Ea1.12 isolate Framoi1121 genome assembly, contig: FMEAI12_Contig_489, whole genome shotgun sequence (415 bp)
Overview 1 RT 1: 1-415 bp Neighborhood of RT #1 [1, 414] RVT-GII Feature: gene Location: 1-414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73-415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73-4 15 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: UBIZ01000191.1 Frankia sp. Ea1.12 isolate Framoi1121 genome assembly, contig: FMEAI12_Contig_270, whole genome shotgun sequence (19218 bp)
Overview 1 RT 1: 15457-18544 bp Neighborhood of RT #1 [15457, 19011] HmoA RVT_N RVT-GII GIIM Feature: gene Location: 15457-15810 bp Feature: gene Location: 15871-16278 bp Feature: domain Description: HmoA Location: 16105-16222 bp Feature: domain Description: HmoA Location: 16105 -16222 bp Feature: gene Location: 17206-19011 bp Feature: domain Description: RVT_N Location: 17305-17545 bp Feature: domain Description: RVT_N Location: 17305 -175 45 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17602-18247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17602-18247 bp Feature: domain Description: GIIM Note: maturase Location: 18313-18544 bp Feature: domain Description: GIIM Note: maturase Location: 18313-185 44 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HmoA (COG2329), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: UBIZ01000041.1 Frankia sp. Ea1.12 isolate Framoi1121 genome assembly, contig: FMEAI12_Contig_135, whole genome shotgun sequence (705 bp)
Overview 1 RT 1: 447-705 bp Neighborhood of RT #1 [447, 704] RVT-GII Feature: gene Location: 447-704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 651-705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 51-705 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: UBIZ01000033.1 Frankia sp. Ea1.12 isolate Framoi1121 genome assembly, contig: FMEAI12_Contig_128, whole genome shotgun sequence (582 bp)
Overview 1 RT 1: 216-582 bp Neighborhood of RT #1 [216, 581] RVT-GII Feature: gene Location: 216-581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 528-582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 528-582 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: UBIZ01000084.1 Frankia sp. Ea1.12 isolate Framoi1121 genome assembly, contig: FMEAI12_Contig_174, whole genome shotgun sequence (12141 bp)
Overview 1 RT 1: 837-4739 bp Neighborhood of RT #1 [837, 4810] Rve RVT-GII Intron_maturas2 DDE_Tnp_IS240 MarR Feature: gene Location: 837-1064 bp Feature: gene Location: 1064-1282 bp Feature: domain Description: Rve Location: 1121-1247 bp Feature: domain Description: Rve Location: 1121-1247 bp Feature: gene Location: 1778-3559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2039-2834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2039-28 34 bp Feature: domain Description: Intron_maturas2 Location: 2945-3155 bp Feature: domain Description: Intron_maturas2 Location: 2945-3155 bp Feature: gene Location: 3658-4185 bp Feature: domain Description: DDE_Tnp_IS240 Location: 3721-4111 bp Feature: domain Description: DDE_Tnp_IS240 Location: 3721-4111 bp Feature: gene Location: 4319-4810 bp Feature: domain Description: MarR Location: 4385-4739 bp Feature: domain Description: MarR Location: 438 5-4739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, Intron_maturas2 (pfam01348), DDE_Tnp_IS240 (pfam13610), MarR (pfam01047)

Seq: UBIZ01000333.1 Frankia sp. Ea1.12 isolate Framoi1121 genome assembly, contig: FMEAI12_Contig_399, whole genome shotgun sequence (976 bp)
Overview 1 RT 1: 407-974 bp Neighborhood of RT #1 [407, 973] RVT-GII Feature: gene Location: 407-973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 818-974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 818-9 74 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: UBIZ01000732.1 Frankia sp. Ea1.12 isolate Framoi1121 genome assembly, contig: FMEAI12_Contig_83, whole genome shotgun sequence (373 bp)
Overview 1 RT 1: 2-242 bp Neighborhood of RT #1 [2, 241] RVT-GII Feature: gene Location: 2-241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14-242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14-242 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: UBIZ01000180.1 Frankia sp. Ea1.12 isolate Framoi1121 genome assembly, contig: FMEAI12_Contig_260, whole genome shotgun sequence (20816 bp)
Overview 1 RT 1: 17899-20544 bp Neighborhood of RT #1 [17899, 20669] HTH_Tnp_1 recomb_XerC RVT-GII GIIM Feature: gene Location: 17899-18330 bp Feature: domain Description: HTH_Tnp_1 Location: 17977-18211 bp Feature: domain Description: HTH_Tnp_1 Location: 17977-18211 bp Feature: gene Location: 18510-18884 bp Feature: domain Description: recomb_XerC Location: 18537-18873 bp Feature: domain Description: recomb_XerC Location: 18537-18873 bp Feature: gene Location: 19293-20669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19608-20238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19608-20238 bp Feature: domain Description: GIIM Note: maturase Location: 20325-20544 bp Feature: domain Description: GIIM Note: maturase Location: 20325-20544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), recomb_XerC (TIGR02224), RVT-GII, GIIM (pfam08388)

Seq: UBIZ01000067.1 Frankia sp. Ea1.12 isolate Framoi1121 genome assembly, contig: FMEAI12_Contig_159, whole genome shotgun sequence (927 bp)
Overview 1 RT 1: 61-532 bp Neighborhood of RT #1 [61, 924] RVT-GII Feature: gene Location: 61-924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67-532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67-532 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: UBIZ01000177.1 Frankia sp. Ea1.12 isolate Framoi1121 genome assembly, contig: FMEAI12_Contig_258, whole genome shotgun sequence (2820 bp)
Overview 1 RT 1: 128-2809 bp Neighborhood of RT #1 [128, 2817] PBP1_ABC_ligand_binding_like_7 DUF4096 DDE_Tnp_1 RVT-GII Feature: gene Location: 128-1297 bp Feature: domain Description: PBP1_ABC_ligand_binding_like_7 Location: 230-1232 bp Feature: domain Description: PBP1_ABC_ligand_binding_like_7 Location: 230-1232 bp Feature: gene Location: 1773-2633 bp Feature: domain Description: DUF4096 Location: 1875-1983 bp Feature: domain Description: DUF4096 Location: 1875-1983 bp Feature: domain Description: DDE_Tnp_1 Location: 2205-2607 bp Feature: domain Description: DDE_Tnp_1 Location: 2205-2607 bp Feature: gene Location: 2647-2817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2653-2809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2653-2809 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP1_ABC_ligand_binding_like_7, DUF4096 (pfam13340), DDE_Tnp_1 (pfam01609), RVT-GII

Seq: UBIZ01000733.1 Frankia sp. Ea1.12 isolate Framoi1121 genome assembly, contig: FMEAI12_Contig_84, whole genome shotgun sequence (374 bp)
Overview 1 RT 1: 2-374 bp Neighborhood of RT #1 [2, 373] RVT-GII Feature: gene Location: 2-373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-374 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: UBIZ01000527.1 Frankia sp. Ea1.12 isolate Framoi1121 genome assembly, contig: FMEAI12_Contig_573, whole genome shotgun sequence (1374 bp)
Overview 1 RT 1: 133-1327 bp Neighborhood of RT #1 [133, 1371] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 133-1371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136-646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136-646 bp Feature: domain Description: Intron_maturas2 Location: 760-982 bp Feature: domain Description: Intron_maturas2 Location: 760-982 bp Feature: domain Description: HNHc Note: nucleases Location: 1174-1327 bp Feature: domain Description: HNHc Note: nucleases Location: 1174-1327 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: UBIZ01000305.1 Frankia sp. Ea1.12 isolate Framoi1121 genome assembly, contig: FMEAI12_Contig_373, whole genome shotgun sequence (476 bp)
Overview 1 RT 1: 1-466 bp Neighborhood of RT #1 [1, 474] RVT-GII Feature: gene Location: 1-474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82-466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82-466 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: UBIZ01000156.1 Frankia sp. Ea1.12 isolate Framoi1121 genome assembly, contig: FMEAI12_Contig_239, whole genome shotgun sequence (2592 bp)
Overview 1 RT 1: 111-1440 bp Neighborhood of RT #1 [111, 1898] RVT_N RVT-GII GIIM Feature: gene Location: 111-1898 bp Feature: domain Description: RVT_N Location: 204-441 bp Feature: domain Description: RVT_N Location: 204-441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 501-1143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 501-1143 bp Feature: domain Description: GIIM Note: maturase Location: 1212-1440 bp Feature: domain Description: GIIM Note: maturase Location: 1212-1440 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)