myRT

myRT report for GCA_900470545.1_AFS057876

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Seq: UCBC01000043.1 Rhizobiales bacterium isolate AFS057876 genome assembly, contig: contig_43, whole genome shotgun sequence (127800 bp)
Overview 1 RT 1: 47167-52755 bp Neighborhood of RT #1 [47167, 52784] repA RVT-Retrons FRG VapI Feature: gene Location: 47167-48351 bp Feature: domain Description: repA Location: 47287-47983 bp Feature: domain Description: repA Location: 47287-47983 bp Feature: gene Location: 48565-48852 bp Feature: gene Location: 49030-50721 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49090-49747 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49090-49747 bp Feature: gene Location: 51030-52229 bp Feature: domain Description: FRG Location: 51576-51849 bp Feature: domain Description: FRG Location: 51 576-51 849 bp Feature: gene Location: 52413-52784 bp Feature: domain Description: VapI Location: 52512-52755 bp Feature: domain Description: VapI Location: 5251 2-52755 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT repA, RVT-Retrons, FRG (smart00901), VapI (COG3093)

Seq: UCBC01000025.1 Rhizobiales bacterium isolate AFS057876 genome assembly, contig: contig_25, whole genome shotgun sequence (75554 bp)
Overview 1 RT 1: 3-4512 bp Neighborhood of RT #1 [3, 4571] ArdC RVT-GII Intron_maturas2 HNHc ArdC LysR Feature: gene Location: 3-344 bp Feature: domain Description: ArdC Location: 6-342 bp Feature: domain Description: ArdC Location: 6-342 bp Feature: gene Location: 530-2446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 797-1634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 797-1634 bp Feature: domain Description: Intron_maturas2 Location: 1715-2003 bp Feature: domain Description: Intron_maturas2 Location: 1715-2 003 bp Feature: domain Description: HNHc Note: nucleases Location: 2168-2327 bp Feature: domain Description: HNHc Note: nucleases Location: 2 168-2 32 7 bp Feature: gene Location: 3060-3464 bp Feature: domain Description: ArdC Location: 3063-3456 bp Feature: domain Description: ArdC Location: 3063-3456 bp Feature: gene Location: 3684-4571 bp Feature: domain Description: LysR Location: 3687-4512 bp Feature: domain Description: LysR Location: 3687-4512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), LysR (COG0583), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)