myRT

myRT report for GCA_900472795.1_AFS089385

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Seq: UCJI01000054.1 Rhizobiales bacterium isolate AFS089385 genome assembly, contig: contig_54, whole genome shotgun sequence (6493 bp)
Overview 1 RT 1: 1818-4679 bp Neighborhood of RT #1 [1818, 4679] PHA02517 RVT-GII GIIM Feature: gene Location: 1818-2018 bp Feature: gene Location: 2195-2653 bp Feature: domain Description: PHA02517 Location: 2198-2651 bp Feature: domain Description: PHA0251 7 Location: 21 98-2651 bp Feature: gene Location: 2754-4280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3027-3759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3027-3759 bp Feature: domain Description: GIIM Note: maturase Location: 3831-4059 bp Feature: domain Description: GIIM Note: maturase Location: 3831 -4059 bp Feature: gene Location: 4300-4443 bp Feature: gene Location: 4464-4679 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UCJI01000021.1 Rhizobiales bacterium isolate AFS089385 genome assembly, contig: contig_21, whole genome shotgun sequence (15424 bp)
Overview 1 RT 1: 1-4726 bp Neighborhood of RT #1 [1, 5208] RVT-UG2 FrmB PRK05298 Feature: gene Location: 1-1092 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 22-736 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2 2 -736 bp Feature: gene Location: 1101-2045 bp Feature: domain Description: FrmB Location: 1119-2043 bp Feature: domain Description: FrmB Location: 1119-2 043 bp Feature: gene Location: 2077-5208 bp Feature: domain Description: PRK05298 Location: 2740-4726 bp Feature: domain Description: PRK052 98 Location: 2 740-472 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, FrmB (COG0627), PRK05298 (excinuclease ABC subunit UvrB)

Seq: UCJI01000002.1 Rhizobiales bacterium isolate AFS089385 genome assembly, contig: contig_2, whole genome shotgun sequence (526601 bp)
Overview 1 RT 1: 267085-277861 bp Neighborhood of RT #1 [267085, 277869] PRK09692 DUF4231 dnaG RVT-UG10 RVT-UG10 PRK09182 PinE Feature: gene Location: 267085-268329 bp Feature: domain Description: PRK09692 Location: 267145-268306 bp Feature: domain Description: PRK09692 Location: 267145-2683 06 bp Feature: gene Location: 268343-268681 bp Feature: domain Description: DUF4231 Location: 268367-268520 bp Feature: domain Description: DUF423 1 Location: 2683 67-268520 bp Feature: gene Location: 268922-276391 bp Feature: domain Description: dnaG Location: 269051-270098 bp Feature: domain Description: dnaG Location: 269051-270098 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 270791-271013 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 270791-271013 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 271193-271475 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 271193 -271475 bp Feature: gene Location: 276439-277299 bp Feature: domain Description: PRK09182 Location: 276445-277291 bp Feature: domain Description: PRK09182 Location: 276445-277291 bp Feature: gene Location: 277321-277869 bp Feature: domain Description: PinE Location: 277324-277861 bp Feature: domain Description: PinE Location: 2773 24-277861 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), DUF4231 (pfam14015), dnaG (TIGR01391), RVT-UG10, PRK09182 (DNA polymerase III subunit epsilon; Validated), PinE (COG1961)

Seq: UCJI01000034.1 Rhizobiales bacterium isolate AFS089385 genome assembly, contig: contig_34, whole genome shotgun sequence (37086 bp)
Overview 1 RT 1: 9847-12374 bp Neighborhood of RT #1 [9847, 12374] HTH_XRE RVT-Retrons OBF_DNA_ligase_LigD Feature: gene Location: 9847-10200 bp Feature: gene Location: 10238-10561 bp Feature: domain Description: HTH_XRE Location: 10274-10436 bp Feature: domain Description: HTH_XRE Location: 10274 -104 36 bp Feature: gene Location: 10551-11591 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10731-11238 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10731-11238 bp Feature: gene Location: 11658-11834 bp Feature: domain Description: OBF_DNA_ligase_LigD Location: 11688-11814 bp Feature: domain Description: OBF_DNA_ligase_LigD Location: 11688-11814 bp Feature: gene Location: 12132-12374 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, OBF_DNA_ligase_LigD (cd07971)