myRT

myRT report for GCA_900473675.1_R129_J

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Seq: UCML01000018.1 Rhizobiales bacterium isolate R129_J genome assembly, contig: contig_18, whole genome shotgun sequence (394231 bp)
Overview 1 RT 1: 293416-297858 bp Neighborhood of RT #1 [293416, 297884] RVT-Retrons UvrD uvrD YciW Feature: gene Location: 293416-293592 bp Feature: gene Location: 293885-294085 bp Feature: gene Location: 293921-294796 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 294074-294605 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 294074-294605 bp Feature: gene Location: 294867-297341 bp Feature: domain Description: UvrD Location: 295032-296961 bp Feature: domain Description: UvrD Location: 295032-296961 bp Feature: domain Description: uvrD Location: 297174-297318 bp Feature: domain Description: uvrD Location: 2971 74-29731 8 bp Feature: gene Location: 297444-297884 bp Feature: domain Description: YciW Location: 297510-297858 bp Feature: domain Description: YciW Location: 29751 0-297858 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, UvrD (COG0210), uvrD (TIGR01075), YciW (COG2128)

Seq: UCML01000060.1 Rhizobiales bacterium isolate R129_J genome assembly, contig: contig_60, whole genome shotgun sequence (24283 bp)
Overview 1 RT 1: 12292-18334 bp Neighborhood of RT #1 [12292, 18334] COG3360 UvrD RVT_N RVT-GII GIIM PRK02406 Feature: gene Location: 12292-12501 bp Feature: domain Description: COG3360 Location: 12295-12499 bp Feature: domain Description: COG3360 Location: 12 2 95-12 499 bp Feature: gene Location: 12709-14775 bp Feature: domain Description: UvrD Location: 12733-14683 bp Feature: domain Description: UvrD Location: 12 733-14683 bp Feature: gene Location: 15549-17069 bp Feature: domain Description: RVT_N Location: 15558-15771 bp Feature: domain Description: RVT_N Location: 15558-15771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15855-16617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15855-16617 bp Feature: domain Description: GIIM Note: maturase Location: 16689-16956 bp Feature: domain Description: GIIM Note: maturase Location: 16689-16956 bp Feature: gene Location: 17286-18185 bp Feature: domain Description: PRK02406 Location: 17289-18153 bp Feature: domain Description: PRK02 406 Location: 172 89-18153 bp Feature: gene Location: 18203-18334 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3360 (Flavin-binding protein dodecin ), UvrD (COG0210), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK02406 (DNA polymerase IV; Validated)

Seq: UCML01000011.1 Rhizobiales bacterium isolate R129_J genome assembly, contig: contig_11, whole genome shotgun sequence (42175 bp)
Overview 1 RT 1: 29973-37588 bp Neighborhood of RT #1 [29973, 37602] RVT-UG3 RVT-UG8 PBP2_OsmF OpuBB Feature: gene Location: 29973-30182 bp Feature: gene Location: 30696-31445 bp Feature: gene Location: 31612-32853 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 31897-32383 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3 1897-3 23 83 bp Feature: gene Location: 33539-34813 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 33542-33815 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 3 3 542-3 3 815 bp Feature: gene Location: 35454-36365 bp Feature: domain Description: PBP2_OsmF Location: 35526-36345 bp Feature: domain Description: PBP2_OsmF Location: 3 5526-3 63 45 bp Feature: gene Location: 36436-37602 bp Feature: domain Description: OpuBB Location: 36889-37588 bp Feature: domain Description: OpuBB Location: 3 6889-3 7588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG3, RVT-UG8, PBP2_OsmF (cd13616), OpuBB (COG1174)