myRT

myRT report for GCA_900478445.1_17261_7_12

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Seq: UCTV01000049.1 Escherichia coli strain VREC0149 genome assembly, contig: ERS784150SCcontig000049, whole genome shotgun sequence (309 bp)
Overview 1 RT 1: 1-307 bp Neighborhood of RT #1 [1, 306] RVT-GII Feature: gene Location: 1-306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169-307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 69-307 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: UCTV01000003.1 Escherichia coli strain VREC0149 genome assembly, contig: ERS784150SCcontig000003, whole genome shotgun sequence (530990 bp)
Overview 1 RT 1: 109012-116612 bp Neighborhood of RT #1 [109012, 116845] HTH_19 COG3617 RVT-Retrons PRK09692 YbjD YbjD Feature: gene Location: 109012-109311 bp Feature: domain Description: HTH_19 Location: 109024-109162 bp Feature: domain Description: HTH_19 Location: 10902 4-109162 bp Feature: gene Location: 109696-110457 bp Feature: domain Description: COG3617 Location: 109750-110137 bp Feature: domain Description: COG3617 Location: 109750-110137 bp Feature: gene Location: 111738-112637 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 111753-112182 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 111753-112 182 bp Feature: gene Location: 113971-115140 bp Feature: domain Description: PRK09692 Location: 113977-115132 bp Feature: domain Description: PRK09692 Location: 113977-115132 bp Feature: gene Location: 115142-116845 bp Feature: domain Description: YbjD Location: 115145-115394 bp Feature: domain Description: YbjD Location: 115145-115394 bp Feature: domain Description: YbjD Location: 115532-116612 bp Feature: domain Description: YbjD Location: 115532 -116612 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_19 (pfam12844), COG3617 (Prophage antirepressor ), RVT-Retrons, PRK09692 (Integrase; provisional), YbjD (COG3593)

Seq: UCTV01000006.1 Escherichia coli strain VREC0149 genome assembly, contig: ERS784150SCcontig000006, whole genome shotgun sequence (399143 bp)
Overview 1 RT 1: 396060-398735 bp Neighborhood of RT #1 [396060, 398980] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 396060-396386 bp Feature: domain Description: InsE Location: 396063-396384 bp Feature: domain Description: InsE Location: 3 96063 -3 963 84 bp Feature: gene Location: 396386-396865 bp Feature: domain Description: PHA02517 Location: 396446-396800 bp Feature: domain Description: PHA02517 Location: 3 96446-3 96800 bp Feature: gene Location: 397634-398980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 397730-398462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 9773 0-3 98462 bp Feature: domain Description: GIIM Note: maturase Location: 398537-398735 bp Feature: domain Description: GIIM Note: maturase Location: 3 9853 7-3 9873 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UCTV01000007.1 Escherichia coli strain VREC0149 genome assembly, contig: ERS784150SCcontig000007, whole genome shotgun sequence (376132 bp)
Overview 1 RT 1: 1-2023 bp Neighborhood of RT #1 [1, 2088] RVT-GII InsE PHA02517 Feature: gene Location: 1-759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274-730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274 -730 bp Feature: gene Location: 713-1138 bp Feature: gene Location: 1351-2088 bp Feature: domain Description: InsE Location: 1363-1615 bp Feature: domain Description: InsE Location: 1363-1615 bp Feature: domain Description: PHA02517 Location: 1687-2023 bp Feature: domain Description: PHA02517 Location: 1687-2023 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII