myRT

myRT report for GCA_900478875.1_17261_7_27

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Seq: UCVG01000078.1 Escherichia coli strain VREC0212 genome assembly, contig: ERS784179SCcontig000078, whole genome shotgun sequence (309 bp)
Overview 1 RT 1: 1-307 bp Neighborhood of RT #1 [1, 306] RVT-GII Feature: gene Location: 1-306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172-307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 72-307 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: UCVG01000020.1 Escherichia coli strain VREC0212 genome assembly, contig: ERS784179SCcontig000020, whole genome shotgun sequence (37498 bp)
Overview 1 RT 1: 2-1763 bp Neighborhood of RT #1 [2, 1828] RVT-GII PHA02517 Feature: gene Location: 2-580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98-554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98-554 bp Feature: gene Location: 711-1136 bp Feature: gene Location: 1349-1828 bp Feature: domain Description: PHA02517 Location: 1409-1763 bp Feature: domain Description: PHA02 517 Location: 1409-1763 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: UCVG01000003.1 Escherichia coli strain VREC0212 genome assembly, contig: ERS784179SCcontig000003, whole genome shotgun sequence (532081 bp)
Overview 1 RT 1: 33581-41265 bp Neighborhood of RT #1 [33581, 41414] YbjD YbjD PRK09692 RVT-Retrons COG3617 HTH_19 Feature: gene Location: 33581-35284 bp Feature: domain Description: YbjD Location: 33584-33833 bp Feature: domain Description: YbjD Location: 3 3 584-3 3 83 3 bp Feature: domain Description: YbjD Location: 33971-35051 bp Feature: domain Description: YbjD Location: 3 3 971-3 5051 bp Feature: gene Location: 35286-36455 bp Feature: domain Description: PRK09692 Location: 35292-36447 bp Feature: domain Description: PRK09692 Location: 3 5292-3 6447 bp Feature: gene Location: 37789-38688 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37804-38233 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 7804-3 823 3 bp Feature: gene Location: 39969-40730 bp Feature: domain Description: COG3617 Location: 40023-40410 bp Feature: domain Description: COG3 617 Location: 40023 -40410 bp Feature: gene Location: 41115-41414 bp Feature: domain Description: HTH_19 Location: 41127-41265 bp Feature: domain Description: HTH_19 Location: 41127-41265 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjD (COG3593), PRK09692 (Integrase; provisional), RVT-Retrons, COG3617 (Prophage antirepressor ), HTH_19 (pfam12844)

Seq: UCVG01000002.1 Escherichia coli strain VREC0212 genome assembly, contig: ERS784179SCcontig000002, whole genome shotgun sequence (785982 bp)
Overview 1 RT 1: 338190-342156 bp Neighborhood of RT #1 [338190, 342173] InsE PHA02517 RVT-GII GIIM PHA02517 INT_RitA_C_like Feature: gene Location: 338190-338417 bp Feature: gene Location: 338522-339259 bp Feature: domain Description: InsE Location: 338534-338786 bp Feature: domain Description: InsE Location: 338534 -338786 bp Feature: domain Description: PHA02517 Location: 338858-339194 bp Feature: domain Description: PHA02517 Location: 338858-339194 bp Feature: gene Location: 339851-341374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340124-340856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 0124 -34 0856 bp Feature: domain Description: GIIM Note: maturase Location: 340931-341129 bp Feature: domain Description: GIIM Note: maturase Location: 34 0931-34 1129 bp Feature: gene Location: 341538-341921 bp Feature: domain Description: PHA02517 Location: 341541-341916 bp Feature: domain Description: PHA02517 Location: 34 154 1-34 1916 bp Feature: gene Location: 341937-342173 bp Feature: domain Description: INT_RitA_C_like Location: 341952-342156 bp Feature: domain Description: INT_RitA_C_like Location: 34 1952-34 2156 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), INT_RitA_C_like (cd01188)