myRT

myRT report for GCA_900480755.1_17870_4_41

Download annotations/find similar RTs

Seq: UDBZ01000016.1 Escherichia coli strain VRES0436 genome assembly, contig: ERS784533SCcontig000016, whole genome shotgun sequence (48872 bp)
Overview 1 RT 1: 42049-45220 bp Neighborhood of RT #1 [42049, 45222] PRK10276 RVT-GII DDE_Tnp_IS1 Feature: gene Location: 42049-42732 bp Feature: domain Description: PRK10276 Location: 42352-42715 bp Feature: domain Description: PRK1 0276 Location: 42352-4271 5 bp Feature: gene Location: 42786-43388 bp Feature: gene Location: 43363-44373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43369-43981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43369-43981 bp Feature: gene Location: 44496-44708 bp Feature: gene Location: 44719-45222 bp Feature: domain Description: DDE_Tnp_IS1 Location: 44830-45220 bp Feature: domain Description: DDE_Tnp_IS1 Location: 44830-45220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, DDE_Tnp_IS1 (pfam03400)

Seq: UDBZ01000008.1 Escherichia coli strain VRES0436 genome assembly, contig: ERS784533SCcontig000008, whole genome shotgun sequence (285863 bp)
Overview 1 RT 1: 54596-61383 bp Neighborhood of RT #1 [54596, 62273] Q RVT-Retrons RVT-AbiP2 Phage_GPA Feature: gene Location: 54596-55615 bp Feature: domain Description: Q Location: 54599-55610 bp Feature: domain Description: Q Location: 54599-55610 bp Feature: gene Location: 55658-56365 bp Feature: gene Location: 56362-57552 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56512-57094 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56512 -57094 bp Feature: gene Location: 58103-59647 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 58520-58973 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 5852 0-58973 bp Feature: gene Location: 59813-60073 bp Feature: gene Location: 60135-62273 bp Feature: domain Description: Phage_GPA Location: 60396-61383 bp Feature: domain Description: Phage_GPA Location: 60396-61383 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), RVT-Retrons, RVT-AbiP2, Phage_GPA (pfam05840)

Seq: UDBZ01000007.1 Escherichia coli strain VRES0436 genome assembly, contig: ERS784533SCcontig000007, whole genome shotgun sequence (288923 bp)
Overview 1 RT 1: 61172-64829 bp Neighborhood of RT #1 [61172, 64829] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 61172-61498 bp Feature: domain Description: InsE Location: 61175-61496 bp Feature: domain Description: InsE Location: 61175-61496 bp Feature: gene Location: 61498-61977 bp Feature: domain Description: PHA02517 Location: 61558-61912 bp Feature: domain Description: PHA02517 Location: 61558-61912 bp Feature: gene Location: 62569-64092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62842-63574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62842-63 574 bp Feature: domain Description: GIIM Note: maturase Location: 63649-63847 bp Feature: domain Description: GIIM Note: maturase Location: 63 649-63 847 bp Feature: gene Location: 64215-64631 bp Feature: domain Description: PHA02517 Location: 64218-64623 bp Feature: domain Description: PHA02517 Location: 64218-64623 bp Feature: gene Location: 64659-64829 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)