myRT

myRT report for GCA_900482495.1_17651_4_81

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Seq: UDIF01000003.1 Escherichia coli strain VRES0680 genome assembly, contig: ERS792395SCcontig000003, whole genome shotgun sequence (639116 bp)
Overview 1 RT 1: 188473-195432 bp 2 RT 2: 259903-265188 bp Neighborhood of RT #1 [188473, 195432] PRK11233 cbl RVT-Retrons AAA_15 Neighborhood of RT #2 [259903, 265205] InsE PHA02517 RVT-GII GIIM PHA02517 LysM IAT_beta PRK15318 Invasin_D3 Feature: gene Location: 188473-189390 bp Feature: domain Description: PRK11233 Location: 188476-189388 bp Feature: domain Description: PRK1 1 233 Location: 1 88476-1 89388 bp Feature: gene Location: 189492-190442 bp Feature: domain Description: cbl Location: 189495-190440 bp Feature: domain Description: cbl Location: 1 89495-1 90440 bp Feature: gene Location: 190757-191857 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 190937-191471 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 90937-1 91 471 bp Feature: gene Location: 191972-194248 bp Feature: domain Description: AAA_15 Location: 192005-193013 bp Feature: domain Description: AAA_1 5 Location: 1 92005-1 9301 3 bp Feature: gene Location: 195127-195432 bp Feature: gene Location: 259903-260187 bp Feature: domain Description: InsE Location: 259915-260176 bp Feature: domain Description: InsE Location: 25991 5-2601 76 bp Feature: gene Location: 260229-260654 bp Feature: domain Description: PHA02517 Location: 260250-260589 bp Feature: domain Description: PHA0251 7 Location: 260250-260589 bp Feature: gene Location: 261246-262769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261519-262251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261 51 9-262251 bp Feature: domain Description: GIIM Note: maturase Location: 262326-262524 bp Feature: domain Description: GIIM Note: maturase Location: 262326-262524 bp Feature: gene Location: 262892-263326 bp Feature: domain Description: PHA02517 Location: 262895-263318 bp Feature: domain Description: PHA0251 7 Location: 262895-26331 8 bp Feature: gene Location: 263328-265205 bp Feature: domain Description: LysM Location: 263568-263706 bp Feature: domain Description: LysM Location: 263568-263706 bp Feature: domain Description: IAT_beta Location: 263787-264612 bp Feature: domain Description: IAT_beta Location: 263787-26461 2 bp Feature: domain Description: PRK15318 Location: 264813-264936 bp Feature: domain Description: PRK1 531 8 Location: 26481 3-264936 bp Feature: domain Description: Invasin_D3 Location: 264951-265188 bp Feature: domain Description: Invasin_D3 Location: 264951 -2651 88 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11233 (nitrogen assimilation transcriptional regulator; Provisional), cbl (PRK12679), RVT-Retrons, AAA_15 (pfam13175), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), LysM (smart00257), IAT_beta (pfam11924)
PRK15318 (intimin-like protein SinH; Provisional), Invasin_D3 (pfam09134)

Seq: UDIF01000007.1 Escherichia coli strain VRES0680 genome assembly, contig: ERS792395SCcontig000007, whole genome shotgun sequence (328669 bp)
Overview 1 RT 1: 203033-209036 bp Neighborhood of RT #1 [203033, 209053] Phage_int_SAM_5 INT_C_like_1 PRK09692 RVT-UG7 Psu Feature: gene Location: 203033-204367 bp Feature: domain Description: Phage_int_SAM_5 Location: 203402-203639 bp Feature: domain Description: Phage_int_SAM_5 Location: 2 03402 -2 03639 bp Feature: domain Description: INT_C_like_1 Location: 203735-204251 bp Feature: domain Description: INT_C_like_1 Location: 2 03735-2 042 51 bp Feature: gene Location: 204636-205820 bp Feature: domain Description: PRK09692 Location: 204642-205797 bp Feature: domain Description: PRK09692 Location: 2 04642 -2 05797 bp Feature: gene Location: 205813-207441 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 206221-206650 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 2 062 2 1-2 06650 bp Feature: gene Location: 207438-208178 bp Feature: gene Location: 208481-209053 bp Feature: domain Description: Psu Location: 208499-209036 bp Feature: domain Description: Psu Location: 2 08499-2 09036 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_5 (pfam13102), INT_C_like_1 (cd01184), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)

Seq: UDIF01000005.1 Escherichia coli strain VRES0680 genome assembly, contig: ERS792395SCcontig000005, whole genome shotgun sequence (499336 bp)
Overview 1 RT 1: 377516-381398 bp Neighborhood of RT #1 [377516, 381403] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 377516-377974 bp Feature: domain Description: dut Location: 377522-377969 bp Feature: domain Description: dut Location: 3 77522-3 77969 bp Feature: gene Location: 378081-378677 bp Feature: domain Description: slmA Location: 378087-378663 bp Feature: domain Description: slmA Location: 3 78087-3 78663 bp Feature: gene Location: 378723-379682 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 378858-379407 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 78858-3 79407 bp Feature: gene Location: 379980-380636 bp Feature: domain Description: pyrE Location: 379998-380631 bp Feature: domain Description: pyrE Location: 3 79998-3 8063 1 bp Feature: gene Location: 380687-381403 bp Feature: domain Description: rph Location: 380690-381398 bp Feature: domain Description: rph Location: 3 80690-3 813 98 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)