myRT

myRT report for GCA_900484195.1_19646_6_85

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Seq: UDOI01000161.1 Shigella flexneri 2a strain 4028STDY6330049 genome assembly, contig: ERS1078910SCcontig000161, whole genome shotgun sequence (6378 bp)
Overview 1 RT 1: 999-4134 bp Neighborhood of RT #1 [999, 4134] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 999-1748 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1074-1728 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1 074-1 728 bp Feature: gene Location: 2144-2344 bp Feature: domain Description: Tra5 Location: 2153-2327 bp Feature: domain Description: Tra5 Location: 21 53-2327 bp Feature: gene Location: 2357-3160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2657-3152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2657-31 52 bp Feature: gene Location: 3213-3539 bp Feature: domain Description: GIIM Note: maturase Location: 3246-3465 bp Feature: domain Description: GIIM Note: maturase Location: 3246-3465 bp Feature: gene Location: 3892-4134 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDOI01000124.1 Shigella flexneri 2a strain 4028STDY6330049 genome assembly, contig: ERS1078910SCcontig000124, whole genome shotgun sequence (10203 bp)
Overview 1 RT 1: 971-8292 bp Neighborhood of RT #1 [971, 8357] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 971-5089 bp Feature: domain Description: ESPR Location: 974-1043 bp Feature: domain Description: ESPR Location: 974-1043 bp Feature: domain Description: Peptidase_S6 Location: 1124-3296 bp Feature: domain Description: Peptidase_S6 Location: 112 4-32 96 bp Feature: domain Description: autotrans_barl Location: 3860-5087 bp Feature: domain Description: autotrans_barl Location: 3860-5087 bp Feature: gene Location: 5254-5640 bp Feature: domain Description: PHA02517 Location: 5257-5638 bp Feature: domain Description: PHA02 517 Location: 52 57-5638 bp Feature: gene Location: 5817-7340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6090-6822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6090-682 2 bp Feature: domain Description: GIIM Note: maturase Location: 6897-7095 bp Feature: domain Description: GIIM Note: maturase Location: 6897-7095 bp Feature: gene Location: 7294-7719 bp Feature: gene Location: 7932-8357 bp Feature: domain Description: PHA02517 Location: 7956-8292 bp Feature: domain Description: PHA02 517 Location: 7956-82 92 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDOI01000169.1 Shigella flexneri 2a strain 4028STDY6330049 genome assembly, contig: ERS1078910SCcontig000169, whole genome shotgun sequence (5867 bp)
Overview 1 RT 1: 1-2637 bp Neighborhood of RT #1 [1, 2651] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 1-183 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-157 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-157 bp Feature: gene Location: 660-1877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1500 bp Feature: domain Description: GIIM Note: maturase Location: 1578-1800 bp Feature: domain Description: GIIM Note: maturase Location: 1578-1800 bp Feature: gene Location: 1993-2139 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2005-2116 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2005-2116 bp Feature: gene Location: 2166-2651 bp Feature: domain Description: COG3547 Location: 2184-2637 bp Feature: domain Description: COG3 547 Location: 2184-263 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)