myRT

myRT report for GCA_900484205.1_19646_6_90

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Seq: UDOQ01000169.1 Shigella flexneri 2a strain 4028STDY6330054 genome assembly, contig: ERS1078915SCcontig000169, whole genome shotgun sequence (5974 bp)
Overview 1 RT 1: 3219-5872 bp Neighborhood of RT #1 [3219, 5872] COG3547 RVT-GII GIIM Feature: gene Location: 3219-3704 bp Feature: domain Description: COG3547 Location: 3237-3690 bp Feature: domain Description: COG3547 Location: 3237-3690 bp Feature: gene Location: 3800-3967 bp Feature: gene Location: 3993-5210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4179-4833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 79-4833 bp Feature: domain Description: GIIM Note: maturase Location: 4911-5133 bp Feature: domain Description: GIIM Note: maturase Location: 491 1 -51 33 bp Feature: gene Location: 5221-5604 bp Feature: gene Location: 5678-5872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDOQ01000108.1 Shigella flexneri 2a strain 4028STDY6330054 genome assembly, contig: ERS1078915SCcontig000108, whole genome shotgun sequence (11589 bp)
Overview 1 RT 1: 981-8356 bp Neighborhood of RT #1 [981, 8421] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 981-5099 bp Feature: domain Description: ESPR Location: 984-1053 bp Feature: domain Description: ESPR Location: 984-1053 bp Feature: domain Description: Peptidase_S6 Location: 1134-3306 bp Feature: domain Description: Peptidase_S6 Location: 1134-3306 bp Feature: domain Description: autotrans_barl Location: 3870-5097 bp Feature: domain Description: autotrans_barl Location: 3870-5097 bp Feature: gene Location: 5264-5650 bp Feature: domain Description: PHA02517 Location: 5267-5648 bp Feature: domain Description: PHA02 517 Location: 52 67-5648 bp Feature: gene Location: 5827-7350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6100-6832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6100-6832 bp Feature: domain Description: GIIM Note: maturase Location: 6907-7105 bp Feature: domain Description: GIIM Note: maturase Location: 6907-7105 bp Feature: gene Location: 7304-7729 bp Feature: gene Location: 7942-8421 bp Feature: domain Description: PHA02517 Location: 8002-8356 bp Feature: domain Description: PHA02 517 Location: 8002 -8356 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDOQ01000162.1 Shigella flexneri 2a strain 4028STDY6330054 genome assembly, contig: ERS1078915SCcontig000162, whole genome shotgun sequence (6318 bp)
Overview 1 RT 1: 1002-4137 bp Neighborhood of RT #1 [1002, 4137] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 1002-1751 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1077-1731 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1077-173 1 bp Feature: gene Location: 2147-2347 bp Feature: domain Description: Tra5 Location: 2156-2330 bp Feature: domain Description: Tra5 Location: 2156-23 3 0 bp Feature: gene Location: 2360-3163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2660-3155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2660-3 155 bp Feature: gene Location: 3216-3542 bp Feature: domain Description: GIIM Note: maturase Location: 3249-3468 bp Feature: domain Description: GIIM Note: maturase Location: 3 249-3 468 bp Feature: gene Location: 3895-4137 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), RVT-GII, GIIM (pfam08388)