myRT

myRT report for GCA_900484265.1_19646_6_60

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Seq: UINU01000181.1 Shigella flexneri 2a strain 4028STDY6330023 genome assembly, contig: ERS1078884SCcontig000181, whole genome shotgun sequence (5129 bp)
Overview 1 RT 1: 2-1922 bp Neighborhood of RT #1 [2, 1936] RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 2-1162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131-785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 31 -785 bp Feature: domain Description: GIIM Note: maturase Location: 863-1085 bp Feature: domain Description: GIIM Note: maturase Location: 863-1 085 bp Feature: gene Location: 1278-1424 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1290-1401 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 290-1 401 bp Feature: gene Location: 1451-1936 bp Feature: domain Description: COG3547 Location: 1469-1922 bp Feature: domain Description: COG3547 Location: 1 469-1 922 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UINU01000034.1 Shigella flexneri 2a strain 4028STDY6330023 genome assembly, contig: ERS1078884SCcontig000034, whole genome shotgun sequence (40593 bp)
Overview 1 RT 1: 3375-11327 bp Neighborhood of RT #1 [3375, 11329] PHA02517 PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 3375-3614 bp Feature: domain Description: PHA02517 Location: 3378-3549 bp Feature: domain Description: PHA02 517 Location: 3378-3549 bp Feature: gene Location: 4060-4368 bp Feature: domain Description: PHA02517 Location: 4153-4303 bp Feature: domain Description: PHA02 517 Location: 4153-4303 bp Feature: gene Location: 4960-6483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5233-5965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 33-5965 bp Feature: domain Description: GIIM Note: maturase Location: 6040-6238 bp Feature: domain Description: GIIM Note: maturase Location: 6040-62 38 bp Feature: gene Location: 6660-7046 bp Feature: domain Description: PHA02517 Location: 6663-7044 bp Feature: domain Description: PHA02 517 Location: 6663-7044 bp Feature: gene Location: 7211-11329 bp Feature: domain Description: ESPR Location: 7214-7283 bp Feature: domain Description: ESPR Location: 72 14-72 83 bp Feature: domain Description: Peptidase_S6 Location: 7364-9536 bp Feature: domain Description: Peptidase_S6 Location: 7364-9536 bp Feature: domain Description: autotrans_barl Location: 10100-11327 bp Feature: domain Description: autotrans_barl Location: 10100-1132 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UINU01000169.1 Shigella flexneri 2a strain 4028STDY6330023 genome assembly, contig: ERS1078884SCcontig000169, whole genome shotgun sequence (5636 bp)
Overview 1 RT 1: 2599-5300 bp Neighborhood of RT #1 [2599, 5320] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2599-2754 bp Feature: gene Location: 2780-3151 bp Feature: domain Description: GIIM Note: maturase Location: 2858-3077 bp Feature: domain Description: GIIM Note: maturase Location: 2858-3 077 bp Feature: gene Location: 3159-3962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3459-3954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 459-3 954 bp Feature: gene Location: 3975-4175 bp Feature: domain Description: Tra5 Location: 3984-4158 bp Feature: domain Description: Tra5 Location: 3 984-4158 bp Feature: gene Location: 4571-5320 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4646-5300 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4646-53 00 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)