myRT

myRT report for GCA_900484335.1_19646_6_62

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Seq: UDOX01000144.1 Shigella flexneri 2a strain 4028STDY6330025 genome assembly, contig: ERS1078886SCcontig000144, whole genome shotgun sequence (7270 bp)
Overview 1 RT 1: 991-5089 bp Neighborhood of RT #1 [991, 5089] PAP2_acid_phosphatase Tra5 RVT-GII Tra5 RVT-GII GIIM Feature: gene Location: 991-1740 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1066-1720 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1 066-1 720 bp Feature: gene Location: 2136-2336 bp Feature: domain Description: Tra5 Location: 2145-2319 bp Feature: domain Description: Tra5 Location: 21 45-231 9 bp Feature: gene Location: 2349-2837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2649-2751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2649-2751 bp Feature: gene Location: 3099-3299 bp Feature: domain Description: Tra5 Location: 3108-3282 bp Feature: domain Description: Tra5 Location: 31 08-3282 bp Feature: gene Location: 3312-4115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3612-4107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361 2-41 07 bp Feature: gene Location: 4168-4494 bp Feature: domain Description: GIIM Note: maturase Location: 4201-4420 bp Feature: domain Description: GIIM Note: maturase Location: 4201 -4420 bp Feature: gene Location: 4847-5089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388)

Seq: UDOX01000161.1 Shigella flexneri 2a strain 4028STDY6330025 genome assembly, contig: ERS1078886SCcontig000161, whole genome shotgun sequence (5965 bp)
Overview 1 RT 1: 3210-5863 bp Neighborhood of RT #1 [3210, 5863] COG3547 RVT-GII GIIM Feature: gene Location: 3210-3695 bp Feature: domain Description: COG3547 Location: 3228-3681 bp Feature: domain Description: COG3547 Location: 32 2 8-3681 bp Feature: gene Location: 3791-3958 bp Feature: gene Location: 3984-5201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4170-4824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4170-482 4 bp Feature: domain Description: GIIM Note: maturase Location: 4902-5124 bp Feature: domain Description: GIIM Note: maturase Location: 4902 -512 4 bp Feature: gene Location: 5212-5595 bp Feature: gene Location: 5669-5863 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDOX01000177.1 Shigella flexneri 2a strain 4028STDY6330025 genome assembly, contig: ERS1078886SCcontig000177, whole genome shotgun sequence (4426 bp)
Overview 1 RT 1: 1-3508 bp Neighborhood of RT #1 [1, 3510] RVT-GII GIIM PHA02517 PHA02517 PHA02517 Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 0-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 173 7-193 5 bp Feature: gene Location: 2357-2980 bp Feature: domain Description: PHA02517 Location: 2360-2624 bp Feature: domain Description: PHA02517 Location: 23 60-2624 bp Feature: domain Description: PHA02517 Location: 2687-2834 bp Feature: domain Description: PHA02517 Location: 2687-283 4 bp Feature: gene Location: 2863-3510 bp Feature: domain Description: PHA02517 Location: 2866-3508 bp Feature: domain Description: PHA02517 Location: 2866-3 508 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)