myRT

myRT report for GCA_900484345.1_19646_6_54

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Seq: UDPB01000021.1 Shigella flexneri 2a strain 4028STDY6330017 genome assembly, contig: ERS1078877SCcontig000021, whole genome shotgun sequence (52666 bp)
Overview 1 RT 1: 49559-52663 bp Neighborhood of RT #1 [49559, 52663] PHA02517 RVT-GII GIIM Feature: gene Location: 49559-49873 bp Feature: gene Location: 49924-50370 bp Feature: domain Description: PHA02517 Location: 49927-50368 bp Feature: domain Description: PHA0251 7 Location: 49927-50368 bp Feature: gene Location: 50487-52010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50760-51492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50760-51 492 bp Feature: domain Description: GIIM Note: maturase Location: 51567-51765 bp Feature: domain Description: GIIM Note: maturase Location: 51 567-51 765 bp Feature: gene Location: 52304-52663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDPB01000156.1 Shigella flexneri 2a strain 4028STDY6330017 genome assembly, contig: ERS1078877SCcontig000156, whole genome shotgun sequence (6564 bp)
Overview 1 RT 1: 300-4383 bp Neighborhood of RT #1 [300, 4383] PAP2_acid_phosphatase Tra5 RVT-GII Tra5 RVT-GII GIIM Feature: gene Location: 300-1049 bp Feature: domain Description: PAP2_acid_phosphatase Location: 375-1029 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 375-102 9 bp Feature: gene Location: 1445-1645 bp Feature: domain Description: Tra5 Location: 1454-1628 bp Feature: domain Description: Tra5 Location: 1454-162 8 bp Feature: gene Location: 1658-2131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1958-2051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1958-2 051 bp Feature: gene Location: 2393-2593 bp Feature: domain Description: Tra5 Location: 2402-2576 bp Feature: domain Description: Tra5 Location: 2 402 -2 576 bp Feature: gene Location: 2606-3409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2906-3401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 906-3401 bp Feature: gene Location: 3462-3788 bp Feature: domain Description: GIIM Note: maturase Location: 3495-3714 bp Feature: domain Description: GIIM Note: maturase Location: 3495-3714 bp Feature: gene Location: 4141-4383 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388)

Seq: UDPB01000168.1 Shigella flexneri 2a strain 4028STDY6330017 genome assembly, contig: ERS1078877SCcontig000168, whole genome shotgun sequence (5577 bp)
Overview 1 RT 1: 2927-5548 bp Neighborhood of RT #1 [2927, 5574] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 2927-3412 bp Feature: domain Description: COG3547 Location: 2945-3398 bp Feature: domain Description: COG3 547 Location: 2945-3 3 98 bp Feature: gene Location: 3508-3675 bp Feature: gene Location: 3701-4918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3887-4541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 887-4541 bp Feature: domain Description: GIIM Note: maturase Location: 4619-4841 bp Feature: domain Description: GIIM Note: maturase Location: 4619-4841 bp Feature: gene Location: 4929-5312 bp Feature: gene Location: 5395-5574 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5398-5548 bp Feature: domain Description: DDE_Tnp_IS66 Location: 53 98-5548 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)