myRT

myRT report for GCA_900484375.1_19646_6_57

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Seq: UEKY01000137.1 Shigella flexneri 2a strain 4028STDY6330020 genome assembly, contig: ERS1078880SCcontig000137, whole genome shotgun sequence (8599 bp)
Overview 1 RT 1: 140-2725 bp Neighborhood of RT #1 [140, 2739] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 140-271 bp Feature: domain Description: DDE_Tnp_IS66 Location: 152-245 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 52-245 bp Feature: gene Location: 832-1965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934-1588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934-1 588 bp Feature: domain Description: GIIM Note: maturase Location: 1666-1888 bp Feature: domain Description: GIIM Note: maturase Location: 1 666-1 888 bp Feature: gene Location: 2081-2227 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2093-2204 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2093-2204 bp Feature: gene Location: 2254-2739 bp Feature: domain Description: COG3547 Location: 2272-2725 bp Feature: domain Description: COG3547 Location: 2272-2725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UEKY01000018.1 Shigella flexneri 2a strain 4028STDY6330020 genome assembly, contig: ERS1078880SCcontig000018, whole genome shotgun sequence (56363 bp)
Overview 1 RT 1: 3239-10655 bp Neighborhood of RT #1 [3239, 10657] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 3239-3367 bp Feature: gene Location: 3457-3696 bp Feature: domain Description: PHA02517 Location: 3460-3631 bp Feature: domain Description: PHA02 517 Location: 3460-3631 bp Feature: gene Location: 4288-5811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4561-5293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4561-52 93 bp Feature: domain Description: GIIM Note: maturase Location: 5368-5566 bp Feature: domain Description: GIIM Note: maturase Location: 5368-5566 bp Feature: gene Location: 5988-6374 bp Feature: domain Description: PHA02517 Location: 5991-6372 bp Feature: domain Description: PHA02 517 Location: 5991-6372 bp Feature: gene Location: 6539-10657 bp Feature: domain Description: ESPR Location: 6542-6611 bp Feature: domain Description: ESPR Location: 6542 -6611 bp Feature: domain Description: Peptidase_S6 Location: 6692-8864 bp Feature: domain Description: Peptidase_S6 Location: 6692 -8864 bp Feature: domain Description: autotrans_barl Location: 9428-10655 bp Feature: domain Description: autotrans_barl Location: 942 8-10655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UEKY01000157.1 Shigella flexneri 2a strain 4028STDY6330020 genome assembly, contig: ERS1078880SCcontig000157, whole genome shotgun sequence (6249 bp)
Overview 1 RT 1: 2562-5263 bp Neighborhood of RT #1 [2562, 5283] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2562-2717 bp Feature: gene Location: 2743-3114 bp Feature: domain Description: GIIM Note: maturase Location: 2821-3040 bp Feature: domain Description: GIIM Note: maturase Location: 2821-3 040 bp Feature: gene Location: 3122-3925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3422-3917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 422-3 917 bp Feature: gene Location: 3938-4138 bp Feature: domain Description: Tra5 Location: 3947-4121 bp Feature: domain Description: Tra5 Location: 3 947-4121 bp Feature: gene Location: 4534-5283 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4609-5263 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4609-5263 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)