myRT

myRT report for GCA_900484385.1_19646_6_53

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Seq: UDPA01000149.1 Shigella flexneri 2a strain 4028STDY6330016 genome assembly, contig: ERS1078876SCcontig000149, whole genome shotgun sequence (7308 bp)
Overview 1 RT 1: 2358-5127 bp Neighborhood of RT #1 [2358, 5127] group_II_RT_mat Tra5 RVT-GII GIIM Feature: gene Location: 2358-2672 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2490-2664 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2490-2664 bp Feature: gene Location: 3137-3337 bp Feature: domain Description: Tra5 Location: 3146-3320 bp Feature: domain Description: Tra5 Location: 31 46-3320 bp Feature: gene Location: 3350-4153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3650-4145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3650-41 45 bp Feature: gene Location: 4206-4532 bp Feature: domain Description: GIIM Note: maturase Location: 4239-4458 bp Feature: domain Description: GIIM Note: maturase Location: 4239-4458 bp Feature: gene Location: 4885-5127 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), Tra5 (COG2801), RVT-GII, GIIM (pfam08388)

Seq: UDPA01000037.1 Shigella flexneri 2a strain 4028STDY6330016 genome assembly, contig: ERS1078876SCcontig000037, whole genome shotgun sequence (37624 bp)
Overview 1 RT 1: 1652-9068 bp Neighborhood of RT #1 [1652, 9070] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1652-1780 bp Feature: gene Location: 1870-2109 bp Feature: domain Description: PHA02517 Location: 1873-2044 bp Feature: domain Description: PHA02 517 Location: 1873-2 044 bp Feature: gene Location: 2701-4224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2974-3706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 974-3706 bp Feature: domain Description: GIIM Note: maturase Location: 3781-3979 bp Feature: domain Description: GIIM Note: maturase Location: 3781-3979 bp Feature: gene Location: 4401-4787 bp Feature: domain Description: PHA02517 Location: 4404-4785 bp Feature: domain Description: PHA02 517 Location: 4404-4785 bp Feature: gene Location: 4952-9070 bp Feature: domain Description: ESPR Location: 4955-5024 bp Feature: domain Description: ESPR Location: 4955-502 4 bp Feature: domain Description: Peptidase_S6 Location: 5105-7277 bp Feature: domain Description: Peptidase_S6 Location: 5105-72 77 bp Feature: domain Description: autotrans_barl Location: 7841-9068 bp Feature: domain Description: autotrans_barl Location: 7841-9068 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDPA01000166.1 Shigella flexneri 2a strain 4028STDY6330016 genome assembly, contig: ERS1078876SCcontig000166, whole genome shotgun sequence (5881 bp)
Overview 1 RT 1: 3231-5852 bp Neighborhood of RT #1 [3231, 5878] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 3231-3716 bp Feature: domain Description: COG3547 Location: 3249-3702 bp Feature: domain Description: COG3 547 Location: 3 249-3 702 bp Feature: gene Location: 3812-3979 bp Feature: gene Location: 4005-5222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4191-4845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4191-4845 bp Feature: domain Description: GIIM Note: maturase Location: 4923-5145 bp Feature: domain Description: GIIM Note: maturase Location: 4923 -5145 bp Feature: gene Location: 5233-5616 bp Feature: gene Location: 5699-5878 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5702-5852 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5702-5852 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)