myRT

myRT report for GCA_900484415.1_19646_6_71

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Seq: UIOL01000083.1 Shigella flexneri 2a strain 4028STDY6330035 genome assembly, contig: ERS1078895SCcontig000083, whole genome shotgun sequence (17028 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 69-262 bp Feature: gene Location: 765-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951 -1 605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1 683-1 905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 1 0-2221 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UIOL01000114.1 Shigella flexneri 2a strain 4028STDY6330035 genome assembly, contig: ERS1078895SCcontig000114, whole genome shotgun sequence (10198 bp)
Overview 1 RT 1: 1266-4686 bp Neighborhood of RT #1 [1266, 4697] InsE PHA02517 RVT-GII GIIM PHA02517 PHA02517 Feature: gene Location: 1266-1568 bp Feature: domain Description: InsE Location: 1275-1557 bp Feature: domain Description: InsE Location: 12 75-1557 bp Feature: gene Location: 1595-1996 bp Feature: domain Description: PHA02517 Location: 1619-1961 bp Feature: domain Description: PHA02 517 Location: 1619-1961 bp Feature: gene Location: 2613-4136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2886-3618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 886-3618 bp Feature: domain Description: GIIM Note: maturase Location: 3693-3891 bp Feature: domain Description: GIIM Note: maturase Location: 3693-3891 bp Feature: gene Location: 4304-4483 bp Feature: domain Description: PHA02517 Location: 4307-4457 bp Feature: domain Description: PHA02 517 Location: 4307-4457 bp Feature: gene Location: 4491-4697 bp Feature: domain Description: PHA02517 Location: 4494-4686 bp Feature: domain Description: PHA02 517 Location: 4494-4686 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UIOL01000156.1 Shigella flexneri 2a strain 4028STDY6330035 genome assembly, contig: ERS1078895SCcontig000156, whole genome shotgun sequence (6346 bp)
Overview 1 RT 1: 967-4102 bp Neighborhood of RT #1 [967, 4102] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 967-1716 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1042-1696 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1042-1696 bp Feature: gene Location: 2112-2312 bp Feature: domain Description: Tra5 Location: 2121-2295 bp Feature: domain Description: Tra5 Location: 2121-2295 bp Feature: gene Location: 2325-3128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2625-3120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2625-3 120 bp Feature: gene Location: 3181-3507 bp Feature: domain Description: GIIM Note: maturase Location: 3214-3433 bp Feature: domain Description: GIIM Note: maturase Location: 3 214-3 43 3 bp Feature: gene Location: 3860-4102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)