myRT

myRT report for GCA_900484435.1_19646_6_73

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Seq: UDPP01000151.1 Shigella flexneri 2a strain 4028STDY6330037 genome assembly, contig: ERS1078897SCcontig000151, whole genome shotgun sequence (6914 bp)
Overview 1 RT 1: 530-4670 bp Neighborhood of RT #1 [530, 4670] PAP2_acid_phosphatase Tra5 RVT-GII Tra5 RVT-GII GIIM Feature: gene Location: 530-1279 bp Feature: domain Description: PAP2_acid_phosphatase Location: 605-1259 bp Feature: domain Description: PAP2_acid_phosphatase Location: 605-1 259 bp Feature: gene Location: 1675-1875 bp Feature: domain Description: Tra5 Location: 1684-1858 bp Feature: domain Description: Tra5 Location: 1 684-1 858 bp Feature: gene Location: 1888-2418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2188-2317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 88-231 7 bp Feature: gene Location: 2680-2880 bp Feature: domain Description: Tra5 Location: 2689-2863 bp Feature: domain Description: Tra5 Location: 2689-2863 bp Feature: gene Location: 2893-3696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3193-3688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 93-3688 bp Feature: gene Location: 3749-4075 bp Feature: domain Description: GIIM Note: maturase Location: 3782-4001 bp Feature: domain Description: GIIM Note: maturase Location: 3782-4001 bp Feature: gene Location: 4428-4670 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388)

Seq: UDPP01000162.1 Shigella flexneri 2a strain 4028STDY6330037 genome assembly, contig: ERS1078897SCcontig000162, whole genome shotgun sequence (5969 bp)
Overview 1 RT 1: 3214-5867 bp Neighborhood of RT #1 [3214, 5867] COG3547 RVT-GII GIIM Feature: gene Location: 3214-3699 bp Feature: domain Description: COG3547 Location: 3232-3685 bp Feature: domain Description: COG3547 Location: 32 32 -3685 bp Feature: gene Location: 3795-3962 bp Feature: gene Location: 3988-5205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4174-4828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4174-482 8 bp Feature: domain Description: GIIM Note: maturase Location: 4906-5128 bp Feature: domain Description: GIIM Note: maturase Location: 4906-512 8 bp Feature: gene Location: 5216-5599 bp Feature: gene Location: 5673-5867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDPP01000165.1 Shigella flexneri 2a strain 4028STDY6330037 genome assembly, contig: ERS1078897SCcontig000165, whole genome shotgun sequence (5903 bp)
Overview 1 RT 1: 3239-5566 bp Neighborhood of RT #1 [3239, 5811] PHA02517 RVT-GII GIIM Feature: gene Location: 3239-3367 bp Feature: gene Location: 3457-3696 bp Feature: domain Description: PHA02517 Location: 3460-3631 bp Feature: domain Description: PHA02517 Location: 3 460-3 63 1 bp Feature: gene Location: 4288-5811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4561-5293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4561-5293 bp Feature: domain Description: GIIM Note: maturase Location: 5368-5566 bp Feature: domain Description: GIIM Note: maturase Location: 53 68-5566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)