myRT

myRT report for GCA_900484455.1_19646_6_72

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Seq: UDPF01000159.1 Shigella flexneri 2a strain 4028STDY6330036 genome assembly, contig: ERS1078896SCcontig000159, whole genome shotgun sequence (6317 bp)
Overview 1 RT 1: 1001-4136 bp Neighborhood of RT #1 [1001, 4136] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 1001-1750 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1076-1730 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1 076-1 730 bp Feature: gene Location: 2146-2346 bp Feature: domain Description: Tra5 Location: 2155-2329 bp Feature: domain Description: Tra5 Location: 21 55-2329 bp Feature: gene Location: 2359-3162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2659-3154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2659-31 54 bp Feature: gene Location: 3215-3541 bp Feature: domain Description: GIIM Note: maturase Location: 3248-3467 bp Feature: domain Description: GIIM Note: maturase Location: 3248-3467 bp Feature: gene Location: 3894-4136 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), RVT-GII, GIIM (pfam08388)

Seq: UDPF01000127.1 Shigella flexneri 2a strain 4028STDY6330036 genome assembly, contig: ERS1078896SCcontig000127, whole genome shotgun sequence (9689 bp)
Overview 1 RT 1: 549-4781 bp Neighborhood of RT #1 [549, 4843] InsE PHA02517 RVT-GII GIIM PHA02517 INT_P4_C Feature: gene Location: 549-851 bp Feature: domain Description: InsE Location: 558-840 bp Feature: domain Description: InsE Location: 558-840 bp Feature: gene Location: 878-1303 bp Feature: domain Description: PHA02517 Location: 902-1238 bp Feature: domain Description: PHA02 517 Location: 902 -12 38 bp Feature: gene Location: 1895-3418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2168-2900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 168-2 900 bp Feature: domain Description: GIIM Note: maturase Location: 2975-3173 bp Feature: domain Description: GIIM Note: maturase Location: 2 975-3173 bp Feature: gene Location: 3583-3987 bp Feature: domain Description: PHA02517 Location: 3586-3976 bp Feature: domain Description: PHA02 517 Location: 3586-3976 bp Feature: gene Location: 4094-4843 bp Feature: domain Description: INT_P4_C Location: 4199-4781 bp Feature: domain Description: INT_P4_C Location: 4199-4781 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), INT_P4_C (cd00801), InsE (COG2963)

Seq: UDPF01000164.1 Shigella flexneri 2a strain 4028STDY6330036 genome assembly, contig: ERS1078896SCcontig000164, whole genome shotgun sequence (5996 bp)
Overview 1 RT 1: 3241-5894 bp Neighborhood of RT #1 [3241, 5894] COG3547 RVT-GII GIIM Feature: gene Location: 3241-3726 bp Feature: domain Description: COG3547 Location: 3259-3712 bp Feature: domain Description: COG3 547 Location: 3 259-3 712 bp Feature: gene Location: 3822-3989 bp Feature: gene Location: 4015-5232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4201-4855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4201-4855 bp Feature: domain Description: GIIM Note: maturase Location: 4933-5155 bp Feature: domain Description: GIIM Note: maturase Location: 493 3 -5155 bp Feature: gene Location: 5243-5626 bp Feature: gene Location: 5700-5894 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)