myRT

myRT report for GCA_900484505.1_19646_6_67

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Seq: UIOB01000161.1 Shigella flexneri 2a strain 4028STDY6330030 genome assembly, contig: ERS1078891SCcontig000161, whole genome shotgun sequence (5949 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 69-262 bp Feature: gene Location: 765-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951 -1 605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1 683-1 905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 1 0-2221 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UIOB01000033.1 Shigella flexneri 2a strain 4028STDY6330030 genome assembly, contig: ERS1078891SCcontig000033, whole genome shotgun sequence (39092 bp)
Overview 1 RT 1: 3120-10536 bp Neighborhood of RT #1 [3120, 10538] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 3120-3248 bp Feature: gene Location: 3338-3577 bp Feature: domain Description: PHA02517 Location: 3341-3512 bp Feature: domain Description: PHA02 517 Location: 3341-3512 bp Feature: gene Location: 4169-5692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4442-5174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4442 -5174 bp Feature: domain Description: GIIM Note: maturase Location: 5249-5447 bp Feature: domain Description: GIIM Note: maturase Location: 52 49-5447 bp Feature: gene Location: 5869-6255 bp Feature: domain Description: PHA02517 Location: 5872-6253 bp Feature: domain Description: PHA02 517 Location: 5872 -62 53 bp Feature: gene Location: 6420-10538 bp Feature: domain Description: ESPR Location: 6423-6492 bp Feature: domain Description: ESPR Location: 642 3-6492 bp Feature: domain Description: Peptidase_S6 Location: 6573-8745 bp Feature: domain Description: Peptidase_S6 Location: 6573-8745 bp Feature: domain Description: autotrans_barl Location: 9309-10536 bp Feature: domain Description: autotrans_barl Location: 9309-10536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UIOB01000098.1 Shigella flexneri 2a strain 4028STDY6330030 genome assembly, contig: ERS1078891SCcontig000098, whole genome shotgun sequence (13316 bp)
Overview 1 RT 1: 2594-5295 bp Neighborhood of RT #1 [2594, 5315] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2594-2749 bp Feature: gene Location: 2775-3146 bp Feature: domain Description: GIIM Note: maturase Location: 2853-3072 bp Feature: domain Description: GIIM Note: maturase Location: 2853 -3 072 bp Feature: gene Location: 3154-3957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3454-3949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 454-3 949 bp Feature: gene Location: 3970-4170 bp Feature: domain Description: Tra5 Location: 3979-4153 bp Feature: domain Description: Tra5 Location: 3 979-4153 bp Feature: gene Location: 4566-5315 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4641-5295 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4641-5295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)