myRT

myRT report for GCA_900484555.1_19646_6_87

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Seq: UDPN01000017.1 Shigella flexneri 2a strain 4028STDY6330051 genome assembly, contig: ERS1078912SCcontig000017, whole genome shotgun sequence (56337 bp)
Overview 1 RT 1: 3213-10629 bp Neighborhood of RT #1 [3213, 10631] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 3213-3341 bp Feature: gene Location: 3431-3670 bp Feature: domain Description: PHA02517 Location: 3434-3605 bp Feature: domain Description: PHA0251 7 Location: 3434-3605 bp Feature: gene Location: 4262-5785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4535-5267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4535-5267 bp Feature: domain Description: GIIM Note: maturase Location: 5342-5540 bp Feature: domain Description: GIIM Note: maturase Location: 5342-5540 bp Feature: gene Location: 5962-6348 bp Feature: domain Description: PHA02517 Location: 5965-6346 bp Feature: domain Description: PHA0251 7 Location: 5965-6346 bp Feature: gene Location: 6513-10631 bp Feature: domain Description: ESPR Location: 6516-6585 bp Feature: domain Description: ESPR Location: 651 6-6585 bp Feature: domain Description: Peptidase_S6 Location: 6666-8838 bp Feature: domain Description: Peptidase_S6 Location: 6666-8838 bp Feature: domain Description: autotrans_barl Location: 9402-10629 bp Feature: domain Description: autotrans_barl Location: 9402-1 0629 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDPN01000164.1 Shigella flexneri 2a strain 4028STDY6330051 genome assembly, contig: ERS1078912SCcontig000164, whole genome shotgun sequence (5862 bp)
Overview 1 RT 1: 3212-5833 bp Neighborhood of RT #1 [3212, 5859] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 3212-3697 bp Feature: domain Description: COG3547 Location: 3230-3683 bp Feature: domain Description: COG3547 Location: 32 30-3683 bp Feature: gene Location: 3793-3960 bp Feature: gene Location: 3986-5203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4172-4826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4172 -482 6 bp Feature: domain Description: GIIM Note: maturase Location: 4904-5126 bp Feature: domain Description: GIIM Note: maturase Location: 4904-512 6 bp Feature: gene Location: 5214-5597 bp Feature: gene Location: 5680-5859 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5683-5833 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5683-5833 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: UDPN01000155.1 Shigella flexneri 2a strain 4028STDY6330051 genome assembly, contig: ERS1078912SCcontig000155, whole genome shotgun sequence (6365 bp)
Overview 1 RT 1: 986-4121 bp Neighborhood of RT #1 [986, 4121] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 986-1735 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1061-1715 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1061-1715 bp Feature: gene Location: 2131-2331 bp Feature: domain Description: Tra5 Location: 2140-2314 bp Feature: domain Description: Tra5 Location: 2140-23 14 bp Feature: gene Location: 2344-3147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2644-3139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2644-3 13 9 bp Feature: gene Location: 3200-3526 bp Feature: domain Description: GIIM Note: maturase Location: 3233-3452 bp Feature: domain Description: GIIM Note: maturase Location: 3 23 3 -3 452 bp Feature: gene Location: 3879-4121 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)