myRT

myRT report for GCA_900484595.1_19646_6_81

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Seq: UDPO01000082.1 Shigella flexneri 2a strain 4028STDY6330045 genome assembly, contig: ERS1078906SCcontig000082, whole genome shotgun sequence (17014 bp)
Overview 1 RT 1: 154-2739 bp Neighborhood of RT #1 [154, 2753] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 154-285 bp Feature: domain Description: DDE_Tnp_IS66 Location: 166-259 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 66-259 bp Feature: gene Location: 762-1979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948-1602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948-1 602 bp Feature: domain Description: GIIM Note: maturase Location: 1680-1902 bp Feature: domain Description: GIIM Note: maturase Location: 1 680-1 902 bp Feature: gene Location: 2095-2241 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2107-2218 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 07-221 8 bp Feature: gene Location: 2268-2753 bp Feature: domain Description: COG3547 Location: 2286-2739 bp Feature: domain Description: COG3547 Location: 2286-2739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDPO01000037.1 Shigella flexneri 2a strain 4028STDY6330045 genome assembly, contig: ERS1078906SCcontig000037, whole genome shotgun sequence (35580 bp)
Overview 1 RT 1: 1-7024 bp Neighborhood of RT #1 [1, 7026] RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: gene Location: 2357-2743 bp Feature: domain Description: PHA02517 Location: 2360-2741 bp Feature: domain Description: PHA02 517 Location: 2 360-2 741 bp Feature: gene Location: 2908-7026 bp Feature: domain Description: ESPR Location: 2911-2980 bp Feature: domain Description: ESPR Location: 2 911-2 980 bp Feature: domain Description: Peptidase_S6 Location: 3061-5233 bp Feature: domain Description: Peptidase_S6 Location: 3061-52 33 bp Feature: domain Description: autotrans_barl Location: 5797-7024 bp Feature: domain Description: autotrans_barl Location: 5797-702 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388)