myRT

myRT report for GCA_900484635.1_19646_6_75

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Seq: UDPV01000159.1 Shigella flexneri 2a strain 4028STDY6330039 genome assembly, contig: ERS1078899SCcontig000159, whole genome shotgun sequence (6283 bp)
Overview 1 RT 1: 967-4102 bp Neighborhood of RT #1 [967, 4102] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 967-1716 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1042-1696 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1 042-1 696 bp Feature: gene Location: 2112-2312 bp Feature: domain Description: Tra5 Location: 2121-2295 bp Feature: domain Description: Tra5 Location: 21 21 -2295 bp Feature: gene Location: 2325-3128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2625-3120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2625-31 20 bp Feature: gene Location: 3181-3507 bp Feature: domain Description: GIIM Note: maturase Location: 3214-3433 bp Feature: domain Description: GIIM Note: maturase Location: 321 4-3433 bp Feature: gene Location: 3860-4102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDPV01000167.1 Shigella flexneri 2a strain 4028STDY6330039 genome assembly, contig: ERS1078899SCcontig000167, whole genome shotgun sequence (5865 bp)
Overview 1 RT 1: 3215-5836 bp Neighborhood of RT #1 [3215, 5862] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 3215-3700 bp Feature: domain Description: COG3547 Location: 3233-3686 bp Feature: domain Description: COG3547 Location: 32 33-3686 bp Feature: gene Location: 3796-3963 bp Feature: gene Location: 3989-5206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4175-4829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4175-482 9 bp Feature: domain Description: GIIM Note: maturase Location: 4907-5129 bp Feature: domain Description: GIIM Note: maturase Location: 4907-512 9 bp Feature: gene Location: 5217-5600 bp Feature: gene Location: 5683-5862 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5686-5836 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5686-5836 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: UDPV01000034.1 Shigella flexneri 2a strain 4028STDY6330039 genome assembly, contig: ERS1078899SCcontig000034, whole genome shotgun sequence (39211 bp)
Overview 1 RT 1: 3239-10655 bp Neighborhood of RT #1 [3239, 10657] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 3239-3367 bp Feature: gene Location: 3457-3696 bp Feature: domain Description: PHA02517 Location: 3460-3631 bp Feature: domain Description: PHA02517 Location: 3 460-3 63 1 bp Feature: gene Location: 4288-5811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4561-5293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4561-5293 bp Feature: domain Description: GIIM Note: maturase Location: 5368-5566 bp Feature: domain Description: GIIM Note: maturase Location: 53 68-5566 bp Feature: gene Location: 5988-6374 bp Feature: domain Description: PHA02517 Location: 5991-6372 bp Feature: domain Description: PHA02517 Location: 5991-63 72 bp Feature: gene Location: 6539-10657 bp Feature: domain Description: ESPR Location: 6542-6611 bp Feature: domain Description: ESPR Location: 6542-6611 bp Feature: domain Description: Peptidase_S6 Location: 6692-8864 bp Feature: domain Description: Peptidase_S6 Location: 6692-8864 bp Feature: domain Description: autotrans_barl Location: 9428-10655 bp Feature: domain Description: autotrans_barl Location: 9428-10655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)