myRT

myRT report for GCA_900484645.1_19646_6_1

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Seq: UDQB01000199.1 Shigella sonnei strain 4028STDY6329964 genome assembly, contig: ERS1078821SCcontig000199, whole genome shotgun sequence (5954 bp)
Overview 1 RT 1: 564-2534 bp Neighborhood of RT #1 [564, 2569] RVT-GII RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 564-1253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1 227 bp Feature: gene Location: 1268-1795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274-1418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 274-1 41 8 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: domain Description: GIIM Note: maturase Location: 1 496-1 71 8 bp Feature: gene Location: 1911-2057 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1923-2034 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 923-2034 bp Feature: gene Location: 2084-2569 bp Feature: domain Description: COG3547 Location: 2102-2534 bp Feature: domain Description: COG3547 Location: 21 02-2534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: UDQB01000160.1 Shigella sonnei strain 4028STDY6329964 genome assembly, contig: ERS1078821SCcontig000160, whole genome shotgun sequence (8848 bp)
Overview 1 RT 1: 4441-7738 bp Neighborhood of RT #1 [4441, 7806] HTH_23 HTH_33 DDE_3 HTH_23 InsE RVT-GII DDE_Tnp_1 Feature: gene Location: 4441-5472 bp Feature: domain Description: HTH_23 Location: 4519-4660 bp Feature: domain Description: HTH_2 3 Location: 4519-4660 bp Feature: domain Description: HTH_33 Location: 4765-4912 bp Feature: domain Description: HTH_33 Location: 4765-4912 bp Feature: domain Description: DDE_3 Location: 4969-5389 bp Feature: domain Description: DDE_3 Location: 4969-5389 bp Feature: gene Location: 5616-6284 bp Feature: domain Description: HTH_23 Location: 5724-5811 bp Feature: domain Description: HTH_2 3 Location: 572 4-5811 bp Feature: domain Description: InsE Location: 5940-6135 bp Feature: domain Description: InsE Location: 5940-6135 bp Feature: gene Location: 6378-6638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6381-6612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6381-6612 bp Feature: gene Location: 6648-7076 bp Feature: gene Location: 7090-7806 bp Feature: domain Description: DDE_Tnp_1 Location: 7096-7738 bp Feature: domain Description: DDE_Tnp_1 Location: 7096-7738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358), InsE (COG2963), RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: UDQB01000208.1 Shigella sonnei strain 4028STDY6329964 genome assembly, contig: ERS1078821SCcontig000208, whole genome shotgun sequence (5426 bp)
Overview 1 RT 1: 1-4588 bp Neighborhood of RT #1 [1, 4590] PRK09409 Tra5 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 1-156 bp Feature: domain Description: PRK09409 Location: 4-154 bp Feature: domain Description: PRK09409 Location: 4-154 bp Feature: gene Location: 277-498 bp Feature: domain Description: Tra5 Location: 289-481 bp Feature: domain Description: Tra5 Location: 289-481 bp Feature: gene Location: 511-1638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 811-1468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 811-1468 bp Feature: gene Location: 1937-2464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1943-2087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1943 -2087 bp Feature: domain Description: GIIM Note: maturase Location: 2171-2387 bp Feature: domain Description: GIIM Note: maturase Location: 2171-23 87 bp Feature: gene Location: 2817-3059 bp Feature: gene Location: 2971-4590 bp Feature: domain Description: ushA Location: 2986-4588 bp Feature: domain Description: ushA Location: 2986-4588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09409 (IS2 transposase TnpB; Reviewed), RVT-GII, GIIM (pfam08388), Tra5 (COG2801), ushA (PRK09558)