myRT

myRT report for GCA_900484665.1_19646_6_69

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Seq: UIOC01000018.1 Shigella flexneri 2a strain 4028STDY6330032 genome assembly, contig: ERS1078893SCcontig000018, whole genome shotgun sequence (57253 bp)
Overview 1 RT 1: 4020-11436 bp Neighborhood of RT #1 [4020, 11438] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 4020-4148 bp Feature: gene Location: 3998-4477 bp Feature: domain Description: PHA02517 Location: 4058-4412 bp Feature: domain Description: PHA0251 7 Location: 4058-441 2 bp Feature: gene Location: 5069-6592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5342-6074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5342-6074 bp Feature: domain Description: GIIM Note: maturase Location: 6149-6347 bp Feature: domain Description: GIIM Note: maturase Location: 61 49-6347 bp Feature: gene Location: 6769-7155 bp Feature: domain Description: PHA02517 Location: 6772-7153 bp Feature: domain Description: PHA0251 7 Location: 6772-71 53 bp Feature: gene Location: 7320-11438 bp Feature: domain Description: ESPR Location: 7323-7392 bp Feature: domain Description: ESPR Location: 7323-7392 bp Feature: domain Description: Peptidase_S6 Location: 7473-9645 bp Feature: domain Description: Peptidase_S6 Location: 7473-9645 bp Feature: domain Description: autotrans_barl Location: 10209-11436 bp Feature: domain Description: autotrans_barl Location: 1 0209-1 1 436 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UIOC01000149.1 Shigella flexneri 2a strain 4028STDY6330032 genome assembly, contig: ERS1078893SCcontig000149, whole genome shotgun sequence (6982 bp)
Overview 1 RT 1: 4227-6880 bp Neighborhood of RT #1 [4227, 6880] COG3547 RVT-GII GIIM Feature: gene Location: 4227-4712 bp Feature: domain Description: COG3547 Location: 4245-4698 bp Feature: domain Description: COG3547 Location: 42 45-4698 bp Feature: gene Location: 4808-4975 bp Feature: gene Location: 5001-6218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5187-5841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5187-5841 bp Feature: domain Description: GIIM Note: maturase Location: 5919-6141 bp Feature: domain Description: GIIM Note: maturase Location: 5919-6141 bp Feature: gene Location: 6229-6612 bp Feature: gene Location: 6686-6880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UIOC01000166.1 Shigella flexneri 2a strain 4028STDY6330032 genome assembly, contig: ERS1078893SCcontig000166, whole genome shotgun sequence (5668 bp)
Overview 1 RT 1: 240-3375 bp Neighborhood of RT #1 [240, 3375] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 240-989 bp Feature: domain Description: PAP2_acid_phosphatase Location: 315-969 bp Feature: domain Description: PAP2_acid_phosphatase Location: 3 15-969 bp Feature: gene Location: 1385-1585 bp Feature: domain Description: Tra5 Location: 1394-1568 bp Feature: domain Description: Tra5 Location: 13 94-1568 bp Feature: gene Location: 1598-2401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1898-2393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1898-23 93 bp Feature: gene Location: 2454-2780 bp Feature: domain Description: GIIM Note: maturase Location: 2487-2706 bp Feature: domain Description: GIIM Note: maturase Location: 2487-2706 bp Feature: gene Location: 3133-3375 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388)