myRT

myRT report for GCA_900484685.1_19646_6_76

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Seq: UDQD01000164.1 Shigella flexneri 2a strain 4028STDY6330040 genome assembly, contig: ERS1078900SCcontig000164, whole genome shotgun sequence (5833 bp)
Overview 1 RT 1: 517-3652 bp Neighborhood of RT #1 [517, 3652] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 517-1266 bp Feature: domain Description: PAP2_acid_phosphatase Location: 592-1246 bp Feature: domain Description: PAP2_acid_phosphatase Location: 592-1 246 bp Feature: gene Location: 1662-1862 bp Feature: domain Description: Tra5 Location: 1671-1845 bp Feature: domain Description: Tra5 Location: 1 671 -1 845 bp Feature: gene Location: 1875-2678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2175-2670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 75-2670 bp Feature: gene Location: 2731-3057 bp Feature: domain Description: GIIM Note: maturase Location: 2764-2983 bp Feature: domain Description: GIIM Note: maturase Location: 2764-2983 bp Feature: gene Location: 3410-3652 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDQD01000029.1 Shigella flexneri 2a strain 4028STDY6330040 genome assembly, contig: ERS1078900SCcontig000029, whole genome shotgun sequence (47732 bp)
Overview 1 RT 1: 41109-44625 bp Neighborhood of RT #1 [41109, 44636] InsE RVT-GII GIIM PHA02517 PHA02517 Feature: gene Location: 41109-41411 bp Feature: domain Description: InsE Location: 41118-41400 bp Feature: domain Description: InsE Location: 41118-41400 bp Feature: gene Location: 41454-41654 bp Feature: gene Location: 42503-44026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42776-43508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 776-43508 bp Feature: domain Description: GIIM Note: maturase Location: 43583-43781 bp Feature: domain Description: GIIM Note: maturase Location: 43583-43781 bp Feature: gene Location: 44243-44422 bp Feature: domain Description: PHA02517 Location: 44246-44396 bp Feature: domain Description: PHA02 517 Location: 442 46-44396 bp Feature: gene Location: 44430-44636 bp Feature: domain Description: PHA02517 Location: 44433-44625 bp Feature: domain Description: PHA02 517 Location: 44433-4462 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: UDQD01000161.1 Shigella flexneri 2a strain 4028STDY6330040 genome assembly, contig: ERS1078900SCcontig000161, whole genome shotgun sequence (5970 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: gene Location: 765-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1683 -1905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3 547 Location: 2289-2742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)