myRT

myRT report for GCA_900484695.1_19646_6_74

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Seq: UDQA01000021.1 Shigella flexneri 2a strain 4028STDY6330038 genome assembly, contig: ERS1078898SCcontig000021, whole genome shotgun sequence (54785 bp)
Overview 1 RT 1: 45707-52884 bp Neighborhood of RT #1 [45707, 52949] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 45707-49825 bp Feature: domain Description: ESPR Location: 45710-45779 bp Feature: domain Description: ESPR Location: 4571 0-45779 bp Feature: domain Description: Peptidase_S6 Location: 45860-48032 bp Feature: domain Description: Peptidase_S6 Location: 45860-48032 bp Feature: domain Description: autotrans_barl Location: 48596-49823 bp Feature: domain Description: autotrans_barl Location: 48596-49823 bp Feature: gene Location: 49990-50376 bp Feature: domain Description: PHA02517 Location: 49993-50374 bp Feature: domain Description: PHA0251 7 Location: 49993-50374 bp Feature: gene Location: 50553-52076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50826-51558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50826-51 558 bp Feature: domain Description: GIIM Note: maturase Location: 51633-51831 bp Feature: domain Description: GIIM Note: maturase Location: 51 633-51 831 bp Feature: gene Location: 52030-52455 bp Feature: gene Location: 52668-52949 bp Feature: domain Description: PHA02517 Location: 52674-52884 bp Feature: domain Description: PHA0251 7 Location: 52674-52884 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDQA01000165.1 Shigella flexneri 2a strain 4028STDY6330038 genome assembly, contig: ERS1078898SCcontig000165, whole genome shotgun sequence (5892 bp)
Overview 1 RT 1: 3242-5863 bp Neighborhood of RT #1 [3242, 5889] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 3242-3727 bp Feature: domain Description: COG3547 Location: 3260-3713 bp Feature: domain Description: COG3547 Location: 32 60-3713 bp Feature: gene Location: 3823-3990 bp Feature: gene Location: 4016-5233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4202-4856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 02 -4856 bp Feature: domain Description: GIIM Note: maturase Location: 4934-5156 bp Feature: domain Description: GIIM Note: maturase Location: 4934-5156 bp Feature: gene Location: 5244-5627 bp Feature: gene Location: 5710-5889 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5713-5863 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5713-5863 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: UDQA01000143.1 Shigella flexneri 2a strain 4028STDY6330038 genome assembly, contig: ERS1078898SCcontig000143, whole genome shotgun sequence (7757 bp)
Overview 1 RT 1: 1663-5576 bp Neighborhood of RT #1 [1663, 5576] PRK08943 HTH_Tnp_1 PHA02517 RVT-GII GIIM Feature: gene Location: 1663-2607 bp Feature: domain Description: PRK08943 Location: 1666-2602 bp Feature: domain Description: PRK08943 Location: 1666-2602 bp Feature: gene Location: 2788-3786 bp Feature: domain Description: HTH_Tnp_1 Location: 2797-3010 bp Feature: domain Description: HTH_Tnp_1 Location: 2797-3 010 bp Feature: domain Description: PHA02517 Location: 3124-3769 bp Feature: domain Description: PHA02517 Location: 3 124-3 769 bp Feature: gene Location: 3799-4602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4099-4594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4099-4594 bp Feature: gene Location: 4655-4981 bp Feature: domain Description: GIIM Note: maturase Location: 4688-4907 bp Feature: domain Description: GIIM Note: maturase Location: 4688-4907 bp Feature: gene Location: 5334-5576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08943 (lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated), HTH_Tnp_1 (pfam01527), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)