myRT

myRT report for GCA_900484775.1_19646_6_84

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Seq: UDQK01000141.1 Shigella flexneri 2a strain 4028STDY6330048 genome assembly, contig: ERS1078909SCcontig000141, whole genome shotgun sequence (8055 bp)
Overview 1 RT 1: 3042-6733 bp Neighborhood of RT #1 [3042, 6798] DDE_Tnp_IS66 DDE_Tnp_IS66_C PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 3042-3401 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3051-3246 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3051 -3246 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3270-3378 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3270-3378 bp Feature: gene Location: 3518-4087 bp Feature: domain Description: PHA02517 Location: 3521-3926 bp Feature: domain Description: PHA0251 7 Location: 3521 -3926 bp Feature: gene Location: 4204-5727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4477-5209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4477-5209 bp Feature: domain Description: GIIM Note: maturase Location: 5284-5482 bp Feature: domain Description: GIIM Note: maturase Location: 5284-5482 bp Feature: gene Location: 5681-6106 bp Feature: gene Location: 6319-6798 bp Feature: domain Description: PHA02517 Location: 6379-6733 bp Feature: domain Description: PHA0251 7 Location: 6379-6733 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDQK01000010.1 Shigella flexneri 2a strain 4028STDY6330048 genome assembly, contig: ERS1078909SCcontig000010, whole genome shotgun sequence (66270 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-2 62 bp Feature: gene Location: 849-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 110-2 2 2 1 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3547 Location: 2 2 89-2 742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)