myRT

myRT report for GCA_900484815.1_19646_6_91

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Seq: UDQH01000203.1 Shigella flexneri 2b strain 4028STDY6330055 genome assembly, contig: ERS1078916SCcontig000203, whole genome shotgun sequence (3278 bp)
Overview 1 RT 1: 76-2292 bp Neighborhood of RT #1 [76, 2312] RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 76-954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376-868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376-868 bp Feature: gene Location: 967-1167 bp Feature: domain Description: Tra5 Location: 976-1150 bp Feature: domain Description: Tra5 Location: 976-1 1 50 bp Feature: gene Location: 1563-2312 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1638-2292 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1 638-2292 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_acid_phosphatase (cd03397), RVT-GII, Tra5 (COG2801)

Seq: UDQH01000168.1 Shigella flexneri 2b strain 4028STDY6330055 genome assembly, contig: ERS1078916SCcontig000168, whole genome shotgun sequence (5867 bp)
Overview 1 RT 1: 3216-5838 bp Neighborhood of RT #1 [3216, 5864] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 3216-3701 bp Feature: domain Description: COG3547 Location: 3234-3687 bp Feature: domain Description: COG3547 Location: 32 34-3687 bp Feature: gene Location: 3797-3964 bp Feature: gene Location: 3990-5207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4176-4830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4176-4830 bp Feature: domain Description: GIIM Note: maturase Location: 4908-5130 bp Feature: domain Description: GIIM Note: maturase Location: 4908-5130 bp Feature: gene Location: 5218-5637 bp Feature: gene Location: 5685-5864 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5688-5838 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5688-5838 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)